Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_9B11_0011/Et/13:22No text annotation
homologous
HL_4YYE_001
NA
HL_9B11_0021/Et/31:39tRNA anticodon loop
homologous
HL_5UD5_002
HL_77082.1
HL_9B11_0031/Et/53:61T-loop with 2 stacked bulged bases
homologous
HL_5HR7_006
HL_28252.6
HL_9B11_0041/L5/37:44No text annotation
homologous
HL_8CRE_001
HL_30068.2
HL_9B11_0051/L5/68:73No text annotation
homologous
HL_8CRE_002
HL_53890.2
HL_9B11_0061/L5/89:95No text annotation
homologous
HL_8CRE_003
HL_37369.2
HL_9B11_0071/L5/131:137No text annotation
HL_9B11_0081/L5/204:211T-loop with 2 bulged bases not stacked
geometric
HL_1P6V_004
HL_28252.6
HL_9B11_0091/L5/222:226No text annotation
geometric
HL_8K0Y_001
HL_75660.5
HL_9B11_0101/L5/230:238No text annotation
homologous
HL_8CRE_007
HL_27670.2
HL_9B11_0111/L5/289:298No text annotation
homologous
HL_8CRE_008
HL_77436.5
HL_9B11_0121/L5/314:323No text annotation
homologous
HL_8CRE_009
HL_77600.2
HL_9B11_0131/L5/368:373GNRA
homologous
HL_8P9A_122
HL_37824.7
HL_9B11_0141/L5/393:398No text annotation
homologous
HL_8CRE_011
HL_37824.7
HL_9B11_0151/L5/516:645No text annotation
HL_9B11_0161/L5/994:1050No text annotation
HL_9B11_0171/L5/1173:1188No text annotation
HL_9B11_0181/L5/1252:1258No text annotation
HL_9B11_0191/L5/1317:1326No text annotation
homologous
HL_8CRE_013
HL_28252.6
HL_9B11_0201/L5/1364:1373No text annotation
HL_9B11_0211/L5/1389:1394No text annotation
homologous
HL_8CRE_015
HL_37824.7
HL_9B11_0221/L5/1405:1412No text annotation
HL_9B11_0231/L5/1436:1448No text annotation
HL_9B11_0241/L5/1480:1484No text annotation
HL_9B11_0251/L5/1561:1566No text annotation
homologous
HL_8CRE_018
HL_37824.7
HL_9B11_0261/L5/1593:1602No text annotation
homologous
HL_8CRE_019
HL_88205.2
HL_9B11_0271/L5/1627:1635No text annotation
homologous
HL_8P9A_133
HL_87553.1
HL_9B11_0281/L5/1675:1680No text annotation
homologous
HL_8P9A_134
HL_70782.2
HL_9B11_0291/L5/1759:1773No text annotation
HL_9B11_0301/L5/1816:1823T-loop related
geometric
HL_5J7L_024
HL_77436.5
HL_9B11_0311/L5/1864:1870No text annotation
homologous
HL_8CRE_024
HL_37824.7
HL_9B11_0321/L5/1886:1893No text annotation
homologous
HL_8P9A_138
HL_42998.2
HL_9B11_0331/L5/1978:1988No text annotation
homologous
HL_8CRE_026
HL_19210.3
HL_9B11_0341/L5/2006:2013No text annotation
homologous
HL_8P9A_140
HL_81538.2
HL_9B11_0351/L5/2110:2252No text annotation
HL_9B11_0361/L5/2317:2322No text annotation
homologous
HL_8CRE_029
HL_37824.7
HL_9B11_0371/L5/2376:2384No text annotation
homologous
HL_8CRE_030
HL_28252.6
HL_9B11_0381/L5/2420:2426No text annotation
homologous
HL_8P9A_144
HL_57176.2
HL_9B11_0391/L5/2458:2463No text annotation
homologous
HL_8CRE_032
HL_37824.7
HL_9B11_0401/L5/2487:2492No text annotation
HL_9B11_0411/L5/2523:2532No text annotation
homologous
HL_8P9A_146
HL_81545.2
HL_9B11_0421/L5/2561:2566GNRA
geometric
HL_9DFE_015
HL_37824.7
HL_9B11_0431/L5/2578:2583No text annotation
homologous
HL_8CRE_035
HL_37824.7
HL_9B11_0441/L5/2624:2632No text annotation
homologous
HL_8P9A_148
HL_77082.1
HL_9B11_0451/L5/2664:2670Other HL
geometric
HL_4V9F_039
HL_77436.5
HL_9B11_0461/L5/2704:2712No text annotation
HL_9B11_0471/L5/2738:2742No text annotation
homologous
HL_8CRE_039
HL_48778.2
HL_9B11_0481/L5/2792:2799No text annotation
homologous
HL_8P9A_152
HL_89567.2
HL_9B11_0491/L5/2810:2816GNRA
homologous
HL_8P9A_153
HL_37824.7
HL_9B11_0501/L5/2872:2877No text annotation
homologous
HL_8CRE_042
HL_34617.5
HL_9B11_0511/L5/2905:3589No text annotation
HL_9B11_0521/L5/2906:3584No text annotation
HL_9B11_0531/L5/3614:3618No text annotation
homologous
HL_8CRE_043
HL_78677.1
HL_9B11_0541/L5/3639:3649No text annotation
homologous
HL_8P9A_157
HL_01962.2
HL_9B11_0551/L5/3668:3674No text annotation
homologous
HL_8CRE_045
HL_37824.7
HL_9B11_0561/L5/3724:3729No text annotation
homologous
HL_8CRE_046
HL_37824.7
HL_9B11_0571/L5/3757:3767No text annotation
homologous
HL_8CRE_047
HL_25847.2
HL_9B11_0581/L5/3796:3804No text annotation
homologous
HL_8CRE_048
HL_20167.2
HL_9B11_0591/L5/3873:3882No text annotation
homologous
HL_8CRE_049
HL_61996.2
HL_9B11_0601/L5/3953:4059No text annotation
HL_9B11_0611/L5/4098:4111No text annotation
HL_9B11_0621/L5/4138:4146No text annotation
HL_9B11_0631/L5/4193:4201No text annotation
homologous
HL_8P9A_165
HL_85367.2
HL_9B11_0641/L5/4210:4222No text annotation
homologous
HL_8P9A_166
HL_91939.2
HL_9B11_0651/L5/4250:4258No text annotation
homologous
HL_8P9A_167
HL_50860.2
HL_9B11_0661/L5/4270:4277No text annotation
homologous
HL_8CRE_056
HL_93324.4
HL_9B11_0671/L5/4301:4309No text annotation
homologous
HL_8CRE_057
HL_80599.2
HL_9B11_0681/L5/4321:4326GNRA
homologous
HL_8P9A_170
HL_37824.7
HL_9B11_0691/L5/4352:4362No text annotation
geometric
HL_7JRT_001
HL_67407.4
HL_9B11_0701/L5/4417:4425No text annotation
homologous
HL_8P9A_172
HL_32735.2
HL_9B11_0711/L5/4474:4481No text annotation
homologous
HL_8P9A_173
HL_31585.3
HL_9B11_0721/L5/4497:4503No text annotation
homologous
HL_8P9A_174
HL_30068.2
HL_9B11_0731/L5/4540:4545GNRA
homologous
HL_8P9A_175
HL_37824.7
HL_9B11_0741/L5/4603:4608No text annotation
homologous
HL_8CRE_064
HL_37824.7
HL_9B11_0751/L5/4646:4651No text annotation
homologous
HL_8CRE_065
HL_65794.5
HL_9B11_0761/L5/4688:4702No text annotation
homologous
HL_8CRE_066
HL_74055.2
HL_9B11_0771/L5/4776:4859No text annotation
HL_9B11_0781/L5/4907:4914No text annotation
geometric
HL_8CRE_068
HL_07886.3
HL_9B11_0791/L5/4975:4983No text annotation
homologous
HL_8CRE_069
HL_64690.6
HL_9B11_0801/L5/5021:5028No text annotation
geometric
HL_8CRE_052
HL_75660.5
HL_9B11_0811/L7/32:45No text annotation
geometric
HL_8OI5_068
HL_13971.1
HL_9B11_0821/L7/36:41No text annotation
homologous
HL_8OI5_069
HL_47787.2
HL_9B11_0831/L7/86:91GNRA
homologous
HL_8P9A_185
HL_37824.7
HL_9B11_0841/L8/47:56No text annotation
homologous
HL_8CRE_074
HL_93438.2
HL_9B11_0851/L8/68:90No text annotation
HL_9B11_0861/L8/107:112No text annotation
homologous
HL_8P9A_188
HL_53890.2
HL_9B11_0871/L8/122:128No text annotation
HL_9B11_0881/S2/7:17No text annotation
homologous
HL_8CRE_191
HL_89881.5
HL_9B11_0891/S2/69:80No text annotation
HL_9B11_0901/S2/156:162No text annotation
homologous
HL_8CRE_193
HL_37824.7
HL_9B11_0911/S2/195:204No text annotation
HL_9B11_0921/S2/288:295No text annotation
homologous
HL_8CRE_196
HL_77436.5
HL_9B11_0931/S2/322:329No text annotation
HL_9B11_0941/S2/377:387No text annotation
HL_9B11_0951/S2/416:421No text annotation
homologous
HL_8CRE_199
HL_37824.7
HL_9B11_0961/S2/441:452No text annotation
homologous
HL_8CRE_200
HL_06226.4
HL_9B11_0971/S2/462:467No text annotation
homologous
HL_8CRE_201
HL_34617.5
HL_9B11_0981/S2/498:504No text annotation
homologous
HL_8CRE_202
HL_48417.5
HL_9B11_0991/S2/539:544No text annotation
HL_9B11_1001/S2/569:581No text annotation
homologous
HL_8P9A_203
HL_05304.3
HL_9B11_1011/S2/618:623No text annotation
homologous
HL_8CRE_205
HL_93535.1
HL_9B11_1021/S2/747:795No text annotation
HL_9B11_1031/S2/820:828No text annotation
homologous
HL_8CRE_207
HL_85367.2
HL_9B11_1041/S2/834:841No text annotation
HL_9B11_1051/S2/885:901No text annotation
HL_9B11_1061/S2/957:966No text annotation
homologous
HL_8CRE_210
HL_75293.5
HL_9B11_1071/S2/994:999GNRA
homologous
HL_8P9A_210
HL_37824.7
HL_9B11_1081/S2/1054:1064No text annotation
homologous
HL_8P9A_211
HL_75293.5
HL_9B11_1091/S2/1113:1120No text annotation
HL_9B11_1101/S2/1141:1146No text annotation
homologous
HL_8CRE_214
HL_37824.7
HL_9B11_1111/S2/1178:1183No text annotation
homologous
HL_8CRE_215
HL_37824.7
HL_9B11_1121/S2/1245:1254No text annotation
homologous
HL_8P9A_215
HL_50779.4
HL_9B11_1131/S2/1295:1304No text annotation
homologous
HL_8CRE_217
HL_81538.2
HL_9B11_1141/S2/1353:1358GNRA variation
geometric
HL_5J7L_180
HL_37824.7
HL_9B11_1151/S2/1366:1373No text annotation
homologous
HL_8CRE_219
HL_77436.5
HL_9B11_1161/S2/1416:1424No text annotation
HL_9B11_1171/S2/1460:1466No text annotation
homologous
HL_8CRE_221
HL_37369.2
HL_9B11_1181/S2/1565:1570No text annotation
homologous
HL_8CRE_222
HL_37824.7
HL_9B11_1191/S2/1614:1625No text annotation
homologous
HL_8P9A_222
HL_67079.1
HL_9B11_1201/S2/1658:1666No text annotation
homologous
HL_8CRE_224
HL_01609.3
HL_9B11_1211/S2/1759:1772No text annotation
HL_9B11_1221/S2/1847:1852No text annotation
homologous
HL_8CRE_225
HL_37824.7

Problematic loops

No problematic loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_9B11_0011/L5/6:7,
1/L8/149:151
Single bulged C
homologous
IL_8P9A_231
IL_61258.15
IL_9B11_0021/L5/12:14,
1/L8/143:144
Single bulged U
homologous
IL_8P9A_232
IL_89505.4
IL_9B11_0031/L5/16:18,
1/L8/139:141
Isolated non-canonical cWW pair
geometric
IL_1Z7F_006
IL_87907.2
IL_9B11_0041/L5/26:27,
1/L5/55:57
No text annotation
homologous
IL_8CRE_004
IL_90729.1
IL_9B11_0051/L5/30:37,
1/L5/44:52
No text annotation
homologous
IL_8CRE_005
IL_84694.2
IL_9B11_0061/L5/81:88,
1/L5/96:102
No text annotation
homologous
IL_8CRE_006
IL_65594.1
IL_9B11_0071/L5/118:122,
1/L5/147:153
No text annotation
IL_9B11_0081/L5/125:126,
1/L5/142:144
Single bulged C
geometric
IL_1DQF_001
IL_61258.15
IL_9B11_0091/L5/169:174,
1/L5/262:266
No text annotation
IL_9B11_0101/L5/180:182,
1/L5/255:256
No text annotation
geometric
IL_8CRE_038
IL_26793.1
IL_9B11_0111/L5/182:189,
1/L5/252:255
No text annotation
IL_9B11_0121/L5/195:196,
1/L5/244:246
Single bulged C
geometric
IL_1DQF_001
IL_61258.15
IL_9B11_0131/L5/199:201,
1/L5/214:215
No text annotation
homologous
IL_8CRE_013
IL_89505.4
IL_9B11_0141/L5/339:342,
1/L8/32:33
Minor groove platform
geometric
IL_9DFE_073
IL_95583.2
IL_9B11_0151/L5/348:350,
1/L8/25:26
No text annotation
homologous
IL_8CRE_014
IL_31462.5
IL_9B11_0161/L5/387:390,
1/L5/401:414
No text annotation
geometric
IL_8CRE_015
IL_81516.2
IL_9B11_0171/L5/415:421,
1/L8/13:19
No text annotation
homologous
IL_8P9A_244
IL_04021.2
IL_9B11_0181/L5/443:446,
1/L5/1300:1304
No text annotation
IL_9B11_0191/L5/448:450,
1/L5/1297:1298
No text annotation
IL_9B11_0201/L5/459:460,
1/L5/695:697
Single bulged C
geometric
IL_3W3S_001
IL_61258.15
IL_9B11_0211/L5/462:464,
1/L5/691:693
Isolated non-canonical cWW pair
geometric
IL_5ED1_002
IL_87907.2
IL_9B11_0221/L5/466:472,
1/L5/682:689
No text annotation
IL_9B11_0231/L5/482:485,
1/L5/671:672
Multiple bulged bases
geometric
IL_5T83_004
IL_66635.5
IL_9B11_0241/L5/487:488,
1/L5/665:669
Minor groove platform
geometric
IL_6DTD_003
IL_51454.2
IL_9B11_0251/L5/491:496,
1/L5/658:662
No text annotation
IL_9B11_0261/L5/496:499,
1/L5/656:658
No text annotation
IL_9B11_0271/L5/500:505,
1/L5/653:655
Single stack bend
geometric
IL_7KGA_003
IL_90729.1
IL_9B11_0281/L5/508:510,
1/L5/649:650
Single bulged A
geometric
IL_6WPI_001
IL_31462.5
IL_9B11_0291/L5/512:516,
1/L5/645:647
No text annotation
IL_9B11_0301/L5/709:710,
1/L5/1286:1288
Single bulged G
geometric
IL_4LFB_036
IL_00225.13
IL_9B11_0311/L5/723:724,
1/L5/942:945
Multiple bulged bases
geometric
IL_7Q80_003
IL_84476.1
IL_9B11_0321/L5/727:731,
1/L5/938:939
No text annotation
IL_9B11_0331/L5/732:735,
1/L5/928:937
No text annotation
IL_9B11_0341/L5/737:742,
1/L5/922:926
No text annotation
IL_9B11_0351/L5/745:752,
1/L5/911:919
No text annotation
geometric
IL_8CRE_022
IL_43858.1
IL_9B11_0361/L5/989:994,
1/L5/1050:1064
No text annotation
IL_9B11_0371/L5/1073:1074,
1/L5/1237:1239
Single bulged A
geometric
IL_4R4V_003
IL_31462.5
IL_9B11_0381/L5/1077:1079,
1/L5/1220:1234
No text annotation
IL_9B11_0391/L5/1082:1084,
1/L5/1213:1217
No text annotation
IL_9B11_0401/L5/1086:1087,
1/L5/1209:1211
Single bulged C
geometric
IL_3W3S_001
IL_61258.15
IL_9B11_0411/L5/1093:1094,
1/L5/1201:1203
No text annotation
IL_9B11_0421/L5/1094:1096,
1/L5/1199:1201
Isolated non-canonical cWW pair
geometric
IL_4WF9_083
IL_87907.2
IL_9B11_0431/L5/1099:1100,
1/L5/1194:1196
No text annotation
geometric
IL_7QR8_009
IL_90729.1
IL_9B11_0441/L5/1100:1168,
1/L5/1193:1194
No text annotation
IL_9B11_0451/L5/1244:1245,
1/L5/1265:1267
No text annotation
geometric
IL_8CRE_048
IL_00225.13
IL_9B11_0461/L5/1357:1360,
1/L5/1379:1382
No text annotation
IL_9B11_0471/L5/1357:1361,
1/L5/1376:1382
No text annotation
IL_9B11_0481/L5/1360:1361,
1/L5/1376:1379
Single bulged A
geometric
IL_4V9F_090
IL_42771.1
IL_9B11_0491/L5/1425:1429,
1/L5/1455:1460
No text annotation
geometric
IL_3BBM_001
IL_80926.1
IL_9B11_0501/L5/1431:1434,
1/L5/1450:1453
Double sheared
geometric
IL_4LFB_060
IL_09705.15
IL_9B11_0511/L5/1467:1468,
1/L5/1496:1498
No text annotation
homologous
IL_8CRE_026
IL_31462.5
IL_9B11_0521/L5/1474:1476,
1/L5/1489:1490
Single stack bend
geometric
IL_7A0S_005
IL_90729.1
IL_9B11_0531/L5/1479:1480,
1/L5/1484:1486
Single bulged C
geometric
IL_5J7L_311
IL_61258.15
IL_9B11_0541/L5/1520:1522,
1/L5/1655:1657
Isolated non-canonical cWW pair
homologous
IL_8P9A_255
IL_87907.2
IL_9B11_0551/L5/1522:1526,
1/L5/1648:1655
No text annotation
homologous
IL_8P9A_256
IL_54041.2
IL_9B11_0561/L5/1545:1546,
1/L5/1612:1614
No text annotation
homologous
IL_8CRE_031
IL_31462.5
IL_9B11_0571/L5/1550:1551,
1/L5/1576:1578
No text annotation
homologous
IL_8CRE_032
IL_00225.13
IL_9B11_0581/L5/1551:1555,
1/L5/1572:1576
No text annotation
homologous
IL_8CRE_033
IL_50730.2
IL_9B11_0591/L5/1586:1589,
1/L5/1605:1607
No text annotation
homologous
IL_8CRE_034
IL_51387.2
IL_9B11_0601/L5/1590:1592,
1/L5/1603:1604
No text annotation
homologous
IL_8CRE_035
IL_89505.4
IL_9B11_0611/L5/1624:1626,
1/L5/1636:1640
No text annotation
homologous
IL_8CRE_036
IL_06549.2
IL_9B11_0621/L5/1671:1673,
1/L5/1682:1684
No text annotation
homologous
IL_8CRE_037
IL_28037.2
IL_9B11_0631/L5/1686:1688,
1/L5/1848:1851
No text annotation
IL_9B11_0641/L5/1694:1721,
1/L5/1841:1842
No text annotation
IL_9B11_0651/L5/1723:1725,
1/L5/1838:1839
No text annotation
homologous
IL_8CRE_040
IL_00225.13
IL_9B11_0661/L5/1732:1737,
1/L5/1792:1797
No text annotation
IL_9B11_0671/L5/1737:1738,
1/L5/1790:1792
No text annotation
homologous
IL_8CRE_042
IL_51454.2
IL_9B11_0681/L5/1739:1744,
1/L5/1786:1789
No text annotation
homologous
IL_8CRE_043
IL_26222.2
IL_9B11_0691/L5/1746:1749,
1/L5/1781:1784
No text annotation
homologous
IL_8CRE_044
IL_77658.1
IL_9B11_0701/L5/1749:1751,
1/L5/1779:1781
Isolated non-canonical cWW pair
homologous
IL_8P9A_270
IL_87907.2
IL_9B11_0711/L5/1753:1756,
1/L5/1775:1777
No text annotation
geometric
IL_4V9F_053
IL_09990.4
IL_9B11_0721/L5/1756:1759,
1/L5/1773:1775
No text annotation
IL_9B11_0731/L5/1814:1816,
1/L5/1823:1824
Single bulged A
homologous
IL_8P9A_273
IL_31462.5
IL_9B11_0741/L5/1858:1860,
1/L5/1874:1876
Isolated non-canonical cWW pair
homologous
IL_8P9A_274
IL_87907.2
IL_9B11_0761/L5/1905:1909,
1/L5/2067:2071
No text annotation
homologous
IL_8P9A_276
IL_38507.2
IL_9B11_0771/L5/1911:1918,
1/L5/2064:2065
No text annotation
homologous
IL_8CRE_052
IL_41203.4
IL_9B11_0781/L5/1918:1920,
1/L5/2063:2064
Single bulged G
geometric
IL_8TSV_002
IL_00225.13
IL_9B11_0791/L5/1920:1922,
1/L5/2062:2063
No text annotation
IL_9B11_0801/L5/1926:1933,
1/L5/2053:2058
No text annotation
homologous
IL_8CRE_054
IL_77278.1
IL_9B11_0811/L5/1933:1944,
1/L5/2038:2053
No text annotation
homologous
IL_8P9A_280
IL_83149.1
IL_9B11_0821/L5/1946:1948,
1/L5/2035:2036
Single bulged U
homologous
IL_8P9A_281
IL_89505.4
IL_9B11_0831/L5/1957:1965,
1/L5/2022:2026
No text annotation
homologous
IL_8CRE_057
IL_99692.2
IL_9B11_0841/L5/1973:1977,
1/L5/1989:1993
No text annotation
homologous
IL_8P9A_283
IL_16218.2
IL_9B11_0851/L5/2001:2005,
1/L5/2014:2016
No text annotation
homologous
IL_8P9A_284
IL_51387.2
IL_9B11_0861/L5/2083:2085,
1/L5/2272:2273
Single bulged C
geometric
IL_4C7O_003
IL_61258.15
IL_9B11_0871/L5/2087:2110,
1/L5/2252:2270
No text annotation
IL_9B11_0881/L5/2290:2292,
1/L5/2342:2345
No text annotation
homologous
IL_8CRE_061
IL_42997.3
IL_9B11_0891/L5/2299:2301,
1/L5/2334:2335
No text annotation
homologous
IL_8CRE_062
IL_31462.5
IL_9B11_0901/L5/2302:2309,
1/L5/2329:2333
Kink-turn
homologous
IL_8P9A_287
IL_70923.9
IL_9B11_0911/L5/2312:2314,
1/L5/2325:2326
Single bulged A
homologous
IL_8P9A_288
IL_31462.5
IL_9B11_0921/L5/2358:2364,
1/L5/3858:3863
No text annotation
homologous
IL_8CRE_065
IL_26307.2
IL_9B11_0931/L5/2415:2419,
1/L5/2427:2429
No text annotation
homologous
IL_8CRE_066
IL_63596.11
IL_9B11_0941/L5/2446:2450,
1/L5/2509:2514
No text annotation
homologous
IL_8CRE_067
IL_38507.2
IL_9B11_0951/L5/2477:2479,
1/L5/2499:2500
No text annotation
IL_9B11_0961/L5/2483:2487,
1/L5/2492:2495
No text annotation
geometric
IL_7VYX_002
IL_85033.2
IL_9B11_0971/L5/2542:2547,
1/L5/2772:2774
No text annotation
IL_9B11_0981/L5/2549:2550,
1/L5/2768:2770
No text annotation
homologous
IL_8CRE_070
IL_82107.4
IL_9B11_0991/L5/2589:2593,
1/L5/2752:2756
No text annotation
homologous
IL_8P9A_295
IL_50730.2
IL_9B11_1001/L5/2613:2614,
1/L5/2724:2726
Single bulged C
homologous
IL_8P9A_297
IL_61258.15
IL_9B11_1011/L5/2614:2615,
1/L5/2722:2724
No text annotation
homologous
IL_8CRE_075
IL_90729.1
IL_9B11_1021/L5/2646:2648,
1/L5/2685:2688
Isolated tHS basepair with bulges
geometric
IL_4V9F_076
IL_85599.2
IL_9B11_1031/L5/2651:2653,
1/L5/2681:2682
Single bulged G
geometric
IL_7D7W_002
IL_00225.13
IL_9B11_1041/L5/2656:2662,
1/L5/2672:2678
No text annotation
homologous
IL_8P9A_301
IL_69543.3
IL_9B11_1051/L5/2832:2838,
1/L5/3850:3853
No text annotation
homologous
IL_8P9A_302
IL_22829.2
IL_9B11_1061/L5/2844:2846,
1/L5/3842:3844
No text annotation
homologous
IL_8P9A_303
IL_67095.2
IL_9B11_1071/L5/2847:2850,
1/L5/3840:3841
Major groove platform; stack outside cWW
geometric
IL_8P9A_304
IL_50694.7
IL_9B11_1081/L5/2847:2855,
1/L5/3837:3841
No text annotation
geometric
IL_8P9A_305
IL_22854.4
IL_9B11_1091/L5/2850:2855,
1/L5/3837:3840
No text annotation
homologous
IL_8P9A_306
IL_76758.2
IL_9B11_1101/L5/2867:2872,
1/L5/2877:2883
No text annotation
homologous
IL_8CRE_084
IL_47346.2
IL_9B11_1111/L5/2889:2891,
1/L5/3610:3612
No text annotation
homologous
IL_8CRE_085
IL_87907.2
IL_9B11_1121/L5/2896:2897,
1/L5/3602:3605
No text annotation
homologous
IL_8CRE_086
IL_73355.1
IL_9B11_1131/L5/2901:2905,
1/L5/3589:3598
No text annotation
IL_9B11_1141/L5/2905:2906,
1/L5/3584:3589
No text annotation
IL_9B11_1151/L5/3632:3633,
1/L5/3827:3829
Single bulged A
homologous
IL_8P9A_310
IL_31462.5
IL_9B11_1161/L5/3660:3665,
1/L5/3677:3684
No text annotation
homologous
IL_8CRE_088
IL_20047.1
IL_9B11_1171/L5/3700:3703,
1/L5/3749:3750
No text annotation
homologous
IL_8CRE_089
IL_95583.2
IL_9B11_1181/L5/3704:3705,
1/L5/3745:3748
No text annotation
homologous
IL_8CRE_090
IL_82107.4
IL_9B11_1191/L5/3708:3710,
1/L5/3741:3742
Single stack bend
geometric
IL_8P9A_367
IL_90729.1
IL_9B11_1201/L5/3708:3714,
1/L5/3739:3742
No text annotation
IL_9B11_1211/L5/3710:3714,
1/L5/3739:3741
No text annotation
IL_9B11_1221/L5/3715:3721,
1/L5/3732:3738
No text annotation
homologous
IL_8CRE_093
IL_88116.2
IL_9B11_1231/L5/3780:3781,
1/L5/3811:3814
No text annotation
geometric
IL_8CRE_094
IL_22551.3
IL_9B11_1241/L5/3781:3792,
1/L5/3808:3811
No text annotation
homologous
IL_8CRE_095
IL_42218.2
IL_9B11_1251/L5/3895:3898,
1/L5/4563:4565
No text annotation
homologous
IL_8P9A_319
IL_55516.2
IL_9B11_1261/L5/3900:3902,
1/L5/4558:4561
No text annotation
homologous
IL_8CRE_097
IL_83389.2
IL_9B11_1271/L5/3913:3915,
1/L5/4388:4389
No text annotation
homologous
IL_8CRE_098
IL_89505.4
IL_9B11_1281/L5/3916:3917,
1/L5/4384:4387
Minor groove platform
homologous
IL_8P9A_322
IL_51454.2
IL_9B11_1291/L5/3927:3929,
1/L5/4181:4184
No text annotation
homologous
IL_8CRE_100
IL_85599.2
IL_9B11_1301/L5/3946:3953,
1/L5/4059:4067
No text annotation
IL_9B11_1311/L5/4082:4088,
1/L5/4161:4164
No text annotation
homologous
IL_8CRE_106
IL_00555.1
IL_9B11_1321/L5/4191:4192,
1/L5/4202:4204
No text annotation
homologous
IL_8CRE_107
IL_33761.2
IL_9B11_1331/L5/4243:4245,
1/L5/4263:4267
No text annotation
homologous
IL_8P9A_326
IL_61476.2
IL_9B11_1341/L5/4291:4293,
1/L5/4317:4318
Single bulged A
geometric
IL_7MKY_001
IL_31462.5
IL_9B11_1351/L5/4295:4298,
1/L5/4312:4315
No text annotation
homologous
IL_8P9A_327
IL_85033.2
IL_9B11_1361/L5/4347:4350,
1/L5/4364:4365
Single stack bend with bulge
geometric
IL_8P9A_328
IL_90729.1
IL_9B11_1371/L5/4400:4401,
1/L5/4442:4444
Major groove platform
homologous
IL_8P9A_329
IL_48076.6
IL_9B11_1381/L5/4401:4403,
1/L5/4440:4442
Isolated non-canonical cWW pair
homologous
IL_8P9A_330
IL_87907.2
IL_9B11_1391/L5/4403:4405,
1/L5/4439:4440
No text annotation
homologous
IL_8CRE_112
IL_07039.3
IL_9B11_1401/L5/4405:4407,
1/L5/4435:4439
No text annotation
homologous
IL_8CRE_113
IL_51387.2
IL_9B11_1411/L5/4412:4416,
1/L5/4426:4430
No text annotation
homologous
IL_8P9A_333
IL_17948.2
IL_9B11_1421/L5/4453:4454,
1/L5/4526:4528
No text annotation
homologous
IL_8P9A_334
IL_07039.3
IL_9B11_1431/L5/4456:4458,
1/L5/4520:4524
No text annotation
homologous
IL_8CRE_116
IL_07785.1
IL_9B11_1441/L5/4458:4459,
1/L5/4517:4520
No text annotation
homologous
IL_8P9A_336
IL_42626.2
IL_9B11_1451/L5/4466:4468,
1/L5/4489:4491
Isolated non-canonical cWW pair
geometric
IL_8P9A_337
IL_87907.2
IL_9B11_1461/L5/4466:4470,
1/L5/4485:4491
No text annotation
IL_9B11_1471/L5/4468:4470,
1/L5/4485:4489
No text annotation
IL_9B11_1481/L5/4495:4497,
1/L5/4503:4505
No text annotation
homologous
IL_8CRE_121
IL_87907.2
IL_9B11_1491/L5/4537:4538,
1/L5/4547:4549
Single bulged A
homologous
IL_8P9A_341
IL_31462.5
IL_9B11_1501/L5/4580:4582,
1/L5/4721:4723
Isolated cWH basepair
geometric
IL_4E5C_001
IL_10167.5
IL_9B11_1511/L5/4582:4585,
1/L5/4717:4721
Double sheared
geometric
IL_6YML_002
IL_09705.15
IL_9B11_1521/L5/4590:4592,
1/L5/4618:4620
Isolated non-canonical cWW pair
homologous
IL_8P9A_343
IL_28037.2
IL_9B11_1531/L5/4596:4603,
1/L5/4608:4614
No text annotation
homologous
IL_8CRE_125
IL_04346.10
IL_9B11_1541/L5/4624:4629,
1/L5/4669:4673
No text annotation
IL_9B11_1551/L5/4632:4637,
1/L5/4662:4666
No text annotation
homologous
IL_8CRE_127
IL_21001.1
IL_9B11_1561/L5/4638:4640,
1/L5/4659:4661
Isolated cWH basepair
geometric
IL_3R1C_012
IL_10167.5
IL_9B11_1571/L5/4641:4642,
1/L5/4655:4658
No text annotation
homologous
IL_8P9A_347
NA
IL_9B11_1581/L5/4681:4685,
1/L5/4705:4709
No text annotation
homologous
IL_8P9A_348
IL_38507.2
IL_9B11_1591/L5/4740:4742,
1/L5/4958:4959
No text annotation
IL_9B11_1601/L5/4743:4746,
1/L5/4954:4957
No text annotation
geometric
IL_8CRE_440
IL_85033.2
IL_9B11_1611/L5/4749:4751,
1/L5/4948:4951
No text annotation
IL_9B11_1621/L5/4756:4765,
1/L5/4869:4877
No text annotation
IL_9B11_1631/L5/4769:4771,
1/L5/4863:4865
Isolated non-canonical cWW pair
geometric
IL_3GM7_006
IL_87907.2
IL_9B11_1641/L5/4774:4776,
1/L5/4859:4860
Single stack bend
geometric
IL_4WF9_089
IL_26793.1
IL_9B11_1651/L5/4885:4889,
1/L5/4930:4934
Triple non-canonical cWW pairs
geometric
IL_8S95_002
IL_49751.4
IL_9B11_1661/L5/4890:4897,
1/L5/4924:4929
No text annotation
IL_9B11_1671/L5/4898:4899,
1/L5/4921:4923
Single stack bend
geometric
IL_4WF9_089
IL_26793.1
IL_9B11_1681/L5/4899:4901,
1/L5/4920:4921
Single bulged C
geometric
IL_1DQF_001
IL_61258.15
IL_9B11_1691/L5/4972:4975,
1/L5/4983:4986
No text annotation
homologous
IL_8CRE_135
IL_77658.1
IL_9B11_1701/L5/4992:4994,
1/L5/5057:5059
Isolated non-canonical cWW pair
geometric
IL_3D0U_006
IL_87907.2
IL_9B11_1711/L5/4996:4997,
1/L5/5053:5055
No text annotation
IL_9B11_1721/L5/5000:5002,
1/L5/5045:5050
No text annotation
homologous
IL_8P9A_359
IL_43622.1
IL_9B11_1731/L5/5003:5009,
1/L5/5039:5044
No text annotation
IL_9B11_1741/L5/5012:5014,
1/L5/5035:5036
No text annotation
homologous
IL_8CRE_140
IL_89505.4
IL_9B11_1751/L5/5014:5017,
1/L5/5032:5035
No text annotation
homologous
IL_8CRE_141
IL_09705.15
IL_9B11_1761/L7/15:16,
1/L7/62:64
Single bulged A
homologous
IL_8P9A_364
IL_31462.5
IL_9B11_1771/L7/21:27,
1/L7/52:57
No text annotation
homologous
IL_8OI5_135
IL_18487.1
IL_9B11_1781/L7/28:29,
1/L7/48:51
No text annotation
homologous
IL_9DFE_112
IL_68140.4
IL_9B11_1791/L7/32:36,
1/L7/41:45
No text annotation
homologous
IL_9DFE_113
IL_58103.11
IL_9B11_1801/L7/71:78,
1/L7/98:104
No text annotation
homologous
IL_8OI5_139
IL_04346.10
IL_9B11_1811/L7/79:81,
1/L7/95:97
Isolated non-canonical cWW pair
homologous
IL_7A0S_107
IL_07785.1
IL_9B11_1821/L7/82:85,
1/L7/92:94
Isolated non-canonical cWW pair
homologous
IL_8P9A_370
IL_87907.2
IL_9B11_1831/L8/64:66,
1/L8/92:95
No text annotation
homologous
IL_8P9A_371
IL_07785.1
IL_9B11_1841/S2/23:25,
1/S2/649:651
Isolated non-canonical cWW pair
geometric
IL_4M4O_001
IL_87907.2
IL_9B11_1851/S2/34:36,
1/S2/519:521
No text annotation
homologous
IL_8CRE_391
IL_87907.2
IL_9B11_1861/S2/37:40,
1/S2/514:518
Double sheared
geometric
IL_4WF9_016
IL_09705.15
IL_9B11_1871/S2/41:47,
1/S2/479:481
No text annotation
geometric
IL_8CRE_393
IL_88082.1
IL_9B11_1881/S2/49:51,
1/S2/476:477
No text annotation
homologous
IL_8CRE_394
IL_51454.2
IL_9B11_1891/S2/57:62,
1/S2/86:88
No text annotation
homologous
IL_8P9A_378
IL_61299.4
IL_9B11_1901/S2/63:68,
1/S2/81:85
No text annotation
homologous
IL_8P9A_379
IL_21667.1
IL_9B11_1911/S2/108:110,
1/S2/351:353
Isolated non-canonical cWW pair
geometric
IL_2O3V_001
IL_28037.2
IL_9B11_1921/S2/110:112,
1/S2/349:351
Isolated non-canonical cWW pair
geometric
IL_7MLW_001
IL_87907.2
IL_9B11_1931/S2/112:115,
1/S2/348:349
No text annotation
homologous
IL_8CRE_398
IL_82107.4
IL_9B11_1941/S2/116:121,
1/S2/343:347
No text annotation
homologous
IL_8P9A_382
IL_29223.1
IL_9B11_1951/S2/123:124,
1/S2/339:341
No text annotation
geometric
IL_8CRE_394
IL_51454.2
IL_9B11_1961/S2/130:144,
1/S2/175:182
No text annotation
IL_9B11_1971/S2/145:151,
1/S2/167:174
No text annotation
homologous
IL_8CRE_400
IL_80604.6
IL_9B11_1981/S2/152:154,
1/S2/164:166
No text annotation
homologous
IL_8P9A_384
IL_44465.1
IL_9B11_1991/S2/188:192,
1/S2/207:211
No text annotation
geometric
IL_8CRE_392
IL_12697.1
IL_9B11_2001/S2/216:219,
1/S2/302:309
No text annotation
IL_9B11_2011/S2/223:288,
1/S2/295:298
No text annotation
IL_9B11_2021/S2/312:314,
1/S2/336:337
Single bulged A
homologous
IL_8P9A_388
IL_31462.5
IL_9B11_2031/S2/317:319,
1/S2/332:333
Single stack bend
geometric
IL_5J7L_044
IL_26793.1
IL_9B11_2041/S2/359:364,
1/S2/396:403
No text annotation
homologous
IL_8CRE_408
IL_46174.3
IL_9B11_2051/S2/366:371,
1/S2/393:394
No text annotation
homologous
IL_8P9A_392
IL_47074.2
IL_9B11_2061/S2/411:413,
1/S2/424:429
No text annotation
homologous
IL_8P9A_393
IL_73789.1
IL_9B11_2071/S2/437:439,
1/S2/454:456
No text annotation
homologous
IL_8CRE_411
IL_10167.5
IL_9B11_2081/S2/459:461,
1/S2/468:470
No text annotation
homologous
IL_8CRE_412
IL_42997.3
IL_9B11_2091/S2/487:489,
1/S2/511:512
Single bulged U
homologous
IL_8P9A_396
IL_89505.4
IL_9B11_2101/S2/491:495,
1/S2/508:509
No text annotation
homologous
IL_8CRE_414
IL_03109.3
IL_9B11_2111/S2/495:496,
1/S2/506:508
Single bulged G
homologous
IL_8P9A_398
IL_00225.13
IL_9B11_2121/S2/528:530,
1/S2/554:557
Isolated non-canonical cWW pair
geometric
IL_4M4O_001
IL_87907.2
IL_9B11_2131/S2/532:534,
1/S2/549:552
No text annotation
geometric
IL_4N0T_004
IL_99358.1
IL_9B11_2141/S2/535:537,
1/S2/546:548
Major groove intercalation
geometric
IL_1U9S_003
IL_82107.4
IL_9B11_2151/S2/566:569,
1/S2/581:584
Tandem non-canonical cWW pairs
geometric
IL_6JDV_001
IL_77658.1
IL_9B11_2161/S2/599:606,
1/S2/636:637
No text annotation
homologous
IL_8CRE_421
IL_41203.4
IL_9B11_2171/S2/606:608,
1/S2/635:636
No text annotation
homologous
IL_8CRE_422
IL_89505.4
IL_9B11_2181/S2/611:617,
1/S2/624:632
No text annotation
homologous
IL_8P9A_404
IL_54177.4
IL_9B11_2191/S2/663:665,
1/S2/1162:1164
Isolated non-canonical cWW pair
geometric
IL_1Y27_001
IL_87907.2
IL_9B11_2201/S2/665:671,
1/S2/1161:1162
No text annotation
homologous
IL_8CRE_424
IL_38186.6
IL_9B11_2211/S2/673:675,
1/S2/1030:1032
No text annotation
homologous
IL_8CRE_425
IL_87907.2
IL_9B11_2221/S2/676:680,
1/S2/1025:1029
No text annotation
homologous
IL_8CRE_426
IL_17136.7
IL_9B11_2231/S2/802:803,
1/S2/860:863
No text annotation
homologous
IL_8P9A_412
IL_68140.4
IL_9B11_2241/S2/805:807,
1/S2/856:858
No text annotation
homologous
IL_8CRE_429
IL_28037.2
IL_9B11_2251/S2/807:815,
1/S2/849:856
No text annotation
homologous
IL_8CRE_430
IL_59049.1
IL_9B11_2261/S2/832:834,
1/S2/841:842
Single stack bend
geometric
IL_7A0S_054
IL_26793.1
IL_9B11_2271/S2/874:876,
1/S2/910:912
Isolated non-canonical cWW pair
geometric
IL_5Y7M_007
IL_87907.2
IL_9B11_2281/S2/877:879,
1/S2/907:909
No text annotation
geometric
IL_8P9A_408
IL_44465.1
IL_9B11_2291/S2/922:923,
1/S2/1019:1022
Major groove platform; stack outside cWW
geometric
IL_6N5P_003
IL_50694.7
IL_9B11_2301/S2/925:926,
1/S2/1015:1017
Single bulged U
geometric
IL_7KVT_002
IL_89505.4
IL_9B11_2311/S2/928:931,
1/S2/1010:1013
No text annotation
homologous
IL_8P9A_419
IL_85033.2
IL_9B11_2321/S2/931:935,
1/S2/1007:1010
No text annotation
homologous
IL_8CRE_434
IL_85033.2
IL_9B11_2331/S2/942:945,
1/S2/981:984
No text annotation
homologous
IL_8CRE_435
IL_85033.2
IL_9B11_2341/S2/952:956,
1/S2/967:974
Kink-turn
geometric
IL_6UFM_001
IL_01488.3
IL_9B11_2351/S2/1042:1047,
1/S2/1071:1073
No text annotation
homologous
IL_8CRE_437
IL_97273.1
IL_9B11_2361/S2/1047:1051,
1/S2/1067:1071
No text annotation
homologous
IL_8CRE_438
IL_17136.7
IL_9B11_2371/S2/1091:1093,
1/S2/1152:1158
No text annotation
homologous
IL_8P9A_425
IL_82706.1
IL_9B11_2381/S2/1098:1101,
1/S2/1131:1134
No text annotation
homologous
IL_8CRE_440
IL_85033.2
IL_9B11_2391/S2/1101:1103,
1/S2/1129:1131
Isolated cWH basepair
geometric
IL_406D_004
IL_10167.5
IL_9B11_2401/S2/1108:1110,
1/S2/1123:1124
Minor groove platform
geometric
IL_8P9A_401
IL_51454.2
IL_9B11_2411/S2/1168:1175,
1/S2/1186:1191
No text annotation
homologous
IL_8CRE_442
IL_41756.4
IL_9B11_2421/S2/1203:1204,
1/S2/1694:1696
Single bulged A
homologous
IL_8P9A_429
IL_31462.5
IL_9B11_2431/S2/1206:1208,
1/S2/1691:1692
No text annotation
homologous
IL_8CRE_444
IL_00225.13
IL_9B11_2441/S2/1214:1217,
1/S2/1681:1685
C-loop
homologous
IL_8P9A_431
IL_63596.11
IL_9B11_2451/S2/1230:1232,
1/S2/1526:1528
No text annotation
homologous
IL_8CRE_446
IL_87907.2
IL_9B11_2461/S2/1235:1236,
1/S2/1521:1523
Minor groove platform
homologous
IL_8P9A_433
IL_51454.2
IL_9B11_2471/S2/1270:1272,
1/S2/1510:1512
No text annotation
homologous
IL_8CRE_448
IL_87907.2
IL_9B11_2481/S2/1281:1287,
1/S2/1314:1316
No text annotation
IL_9B11_2491/S2/1281:1290,
1/S2/1309:1316
No text annotation
IL_9B11_2501/S2/1287:1290,
1/S2/1309:1314
No text annotation
IL_9B11_2511/S2/1291:1293,
1/S2/1306:1308
No text annotation
homologous
IL_8CRE_450
IL_10167.5
IL_9B11_2521/S2/1325:1327,
1/S2/1502:1503
No text annotation
homologous
IL_8CRE_451
IL_89505.4
IL_9B11_2531/S2/1329:1333,
1/S2/1498:1500
No text annotation
geometric
IL_8CRE_452
IL_76319.5
IL_9B11_2541/S2/1329:1335,
1/S2/1492:1500
No text annotation
geometric
IL_8P9A_439
IL_86012.1
IL_9B11_2551/S2/1333:1335,
1/S2/1492:1498
No text annotation
homologous
IL_8P9A_440
IL_49061.1
IL_9B11_2561/S2/1337:1338,
1/S2/1488:1490
No text annotation
homologous
IL_8CRE_455
IL_31462.5
IL_9B11_2571/S2/1347:1349,
1/S2/1380:1382
Isolated cWH basepair
homologous
IL_8P9A_442
IL_10167.5
IL_9B11_2581/S2/1363:1365,
1/S2/1374:1375
Minor groove platform
homologous
IL_8P9A_443
IL_51454.2
IL_9B11_2591/S2/1395:1399,
1/S2/1447:1450
Tandem non-canonical cWW pairs
geometric
IL_5EW4_002
IL_85033.2
IL_9B11_2601/S2/1402:1405,
1/S2/1441:1444
No text annotation
homologous
IL_8CRE_481
IL_78800.1
IL_9B11_2611/S2/1408:1409,
1/S2/1432:1438
No text annotation
IL_9B11_2621/S2/1412:1413,
1/S2/1427:1429
Single bulged G
geometric
IL_5J7L_019
IL_00225.13
IL_9B11_2631/S2/1537:1539,
1/S2/1594:1596
Isolated non-canonical cWW pair
geometric
IL_3TD0_001
IL_28037.2
IL_9B11_2641/S2/1541:1550,
1/S2/1582:1592
No text annotation
IL_9B11_2651/S2/1550:1558,
1/S2/1577:1582
No text annotation
IL_9B11_2661/S2/1560:1562,
1/S2/1573:1575
No text annotation
homologous
IL_8CRE_464
IL_07785.1
IL_9B11_2671/S2/1604:1611,
1/S2/1629:1635
No text annotation
IL_9B11_2681/S2/1611:1612,
1/S2/1627:1629
Single stack bend
geometric
IL_5J7L_391
IL_26793.1
IL_9B11_2691/S2/1700:1702,
1/S2/1833:1836
No text annotation
homologous
IL_8CRE_466
IL_61438.4
IL_9B11_2701/S2/1702:1705,
1/S2/1829:1833
No text annotation
homologous
IL_8CRE_467
IL_65718.4
IL_9B11_2711/S2/1706:1708,
1/S2/1826:1828
No text annotation
homologous
IL_8CRE_468
IL_87907.2
IL_9B11_2721/S2/1708:1711,
1/S2/1822:1826
No text annotation
geometric
IL_8BH9_001
IL_51479.1
IL_9B11_2731/S2/1714:1716,
1/S2/1817:1819
No text annotation
homologous
IL_8CRE_470
IL_87907.2
IL_9B11_2741/S2/1717:1720,
1/S2/1813:1816
Double sheared
homologous
IL_8P9A_457
IL_09705.15
IL_9B11_2751/S2/1720:1722,
1/S2/1811:1813
Single bulged U
homologous
IL_8P9A_458
IL_89505.4
IL_9B11_2761/S2/1722:1724,
1/S2/1810:1811
Single stack bend
geometric
IL_7MLX_001
IL_90729.1
IL_9B11_2771/S2/1729:1731,
1/S2/1803:1805
No text annotation
homologous
IL_8CRE_473
IL_07785.1
IL_9B11_2781/S2/1733:1736,
1/S2/1798:1801
No text annotation
homologous
IL_8CRE_474
IL_09705.15
IL_9B11_2791/S2/1739:1741,
1/S2/1793:1795
Isolated non-canonical cWW pair
geometric
IL_4E48_002
IL_87907.2
IL_9B11_2801/S2/1742:1746,
1/S2/1788:1792
No text annotation
homologous
IL_8CRE_476
IL_50730.2
IL_9B11_2811/S2/1750:1756,
1/S2/1777:1784
No text annotation
IL_9B11_2821/S2/1756:1759,
1/S2/1772:1777
No text annotation

Problematic loops

#loop idProblemSequence
IL_9B11_075No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_9B11_0011/L5/112:116,
1/L5/155:160,
1/L5/275:278
No text annotation
J3_9B11_0021/L5/196:199,
1/L5/215:228,
1/L5/240:244
No text annotation
J3_9B11_0031/L5/351:367,
1/L5/374:379,
1/L8/21:24
No text annotation
homologous
J3_8P9A_045
J3_30040.2
J3_9B11_0041/L5/380:387,
1/L5/414:415,
1/L8/19:20
No text annotation
geometric
J3_5J7L_036
J3_60031.2
J3_9B11_0051/L5/380:390,
1/L5/401:415,
1/L8/19:20
No text annotation
homologous
J3_8CRE_006
J3_92134.2
J3_9B11_0061/L5/451:455,
1/L5/701:705,
1/L5/1292:1296
No text annotation
J3_9B11_0071/L5/712:713,
1/L5/955:976,
1/L5/1278:1284
No text annotation
J3_9B11_0081/L5/1531:1537,
1/L5/1622:1624,
1/L5/1640:1643
No text annotation
homologous
J3_8CRE_009
J3_64189.2
J3_9B11_0091/L5/1546:1548,
1/L5/1580:1584,
1/L5/1609:1612
No text annotation
homologous
J3_8CRE_010
J3_44724.7
J3_9B11_0101/L5/1726:1727,
1/L5/1802:1806,
1/L5/1832:1837
No text annotation
homologous
J3_8P9A_051
J3_09667.1
J3_9B11_0111/L5/1969:1971,
1/L5/1995:2001,
1/L5/2016:2018
No text annotation
homologous
J3_8P9A_052
J3_28621.5
J3_9B11_0121/L5/2393:2399,
1/L5/2805:2807,
1/L5/2819:2822
No text annotation
homologous
J3_8P9A_053
J3_19545.2
J3_9B11_0131/L5/2402:2405,
1/L5/2785:2791,
1/L5/2800:2802
No text annotation
homologous
J3_8CRE_014
J3_19545.2
J3_9B11_0141/L5/2440:2445,
1/L5/2515:2519,
1/L5/2536:2537
No text annotation
homologous
J3_8P9A_055
J3_31965.2
J3_9B11_0151/L5/2451:2456,
1/L5/2465:2476,
1/L5/2501:2508
No text annotation
homologous
J3_8CRE_016
J3_65403.1
J3_9B11_0161/L5/2551:2555,
1/L5/2572:2575,
1/L5/2757:2767
No text annotation
J3_9B11_0171/L5/2575:2576,
1/L5/2585:2589,
1/L5/2756:2757
No text annotation
homologous
J3_8P9A_087
J3_75962.2
J3_9B11_0181/L5/2598:2602,
1/L5/2737:2738,
1/L5/2742:2747
No text annotation
homologous
J3_8CRE_018
J3_12393.2
J3_9B11_0191/L5/3937:3939,
1/L5/4074:4078,
1/L5/4168:4173
Kink-turn in J3
geometric
J3_5J7L_044
J3_89368.5
J3_9B11_0201/L5/4091:4097,
1/L5/4112:4129,
1/L5/4155:4158
No text annotation
J3_9B11_0211/L5/4228:4230,
1/L5/4331:4342,
1/L5/4370:4375
No text annotation
homologous
J3_8CRE_021
J3_20992.1
J3_9B11_0221/L5/4241:4243,
1/L5/4267:4269,
1/L5/4278:4283
No text annotation
homologous
J3_8P9A_062
J3_61124.2
J3_9B11_0231/L5/4463:4466,
1/L5/4491:4493,
1/L5/4507:4513
No text annotation
homologous
J3_8P9A_063
J3_62630.1
J3_9B11_0241/L5/4751:4754,
1/L5/4879:4883,
1/L5/4936:4948
No text annotation
J3_9B11_0251/L5/4970:4972,
1/L5/4986:4991,
1/L5/5060:5063
No text annotation
J3_9B11_0261/L7/9:14,
1/L7/65:66,
1/L7/109:110
No text annotation
homologous
J3_8P9A_066
J3_12003.2
J3_9B11_0271/L8/44:45,
1/L8/58:64,
1/L8/95:99
No text annotation
homologous
J3_8CRE_027
J3_35667.2
J3_9B11_0281/S2/40:41,
1/S2/481:487,
1/S2/512:514
No text annotation
geometric
J3_8CRE_071
J3_67856.4
J3_9B11_0291/S2/40:47,
1/S2/479:487,
1/S2/512:514
No text annotation
homologous
J3_8CRE_072
J3_46317.4
J3_9B11_0301/S2/682:684,
1/S2/918:922,
1/S2/1022:1023
No text annotation
geometric
J3_8P9A_071
J3_56052.5
J3_9B11_0311/S2/682:684,
1/S2/918:923,
1/S2/1019:1023
No text annotation
homologous
J3_8P9A_072
J3_17385.4
J3_9B11_0321/S2/816:819,
1/S2/829:831,
1/S2/843:848
No text annotation
homologous
J3_8P9A_073
J3_97642.1
J3_9B11_0331/S2/938:941,
1/S2/985:993,
1/S2/1000:1004
No text annotation
homologous
J3_8P9A_074
J3_76375.1
J3_9B11_0341/S2/1094:1096,
1/S2/1136:1140,
1/S2/1147:1151
No text annotation
J3_9B11_0351/S2/1218:1221,
1/S2/1645:1651,
1/S2/1673:1680
No text annotation
homologous
J3_8P9A_076
J3_25303.4
J3_9B11_0361/S2/1225:1228,
1/S2/1530:1532,
1/S2/1638:1641
No text annotation
homologous
J3_8CRE_079
J3_52655.4
J3_9B11_0371/S2/1237:1244,
1/S2/1255:1266,
1/S2/1516:1520
No text annotation
homologous
J3_8CRE_080
J3_83516.4
J3_9B11_0381/S2/1272:1277,
1/S2/1320:1324,
1/S2/1504:1510
No text annotation
homologous
J3_8CRE_081
J3_87797.1
J3_9B11_0391/S2/1340:1345,
1/S2/1384:1389,
1/S2/1481:1486
No text annotation
homologous
J3_8P9A_080
J3_99563.1
J3_9B11_0401/S2/1350:1351,
1/S2/1360:1363,
1/S2/1375:1379
No text annotation
homologous
J3_8CRE_083
J3_76043.3
J3_9B11_0411/S2/1391:1395,
1/S2/1450:1456,
1/S2/1470:1479
No text annotation
J3_9B11_0421/S2/1532:1536,
1/S2/1597:1604,
1/S2/1635:1638
No text annotation
homologous
J3_8CRE_086
J3_37047.6
J4_9B11_0011/Et/7:10,
1/Et/25:27,
1/Et/43:49,
1/Et/65:66
tRNA junction
homologous
J4_1IL2_001
J4_70449.27
J4_9B11_0021/L5/111:112,
1/L5/278:283,
1/L5/304:310,
1/L5/327:330
No text annotation
homologous
J4_8P9A_012
J4_45801.6
J4_9B11_0031/L5/196:199,
1/L5/215:222,
1/L5/226:228,
1/L5/240:244
No text annotation
J4_9B11_0041/L5/981:983,
1/L5/1070:1072,
1/L5/1240:1243,
1/L5/1268:1273
No text annotation
J4_9B11_0051/L5/2365:2371,
1/L5/2389:2391,
1/L5/2824:2829,
1/L5/3856:3857
No text annotation
J4_9B11_0061/L5/2406:2410,
1/L5/2434:2439,
1/L5/2538:2539,
1/L5/2777:2784
No text annotation
homologous
J4_8CRE_004
J4_69051.6
J4_9B11_0071/L5/2618:2619,
1/L5/2637:2642,
1/L5/2692:2698,
1/L5/2718:2719
No text annotation
J4_9B11_0081/L5/3634:3638,
1/L5/3650:3654,
1/L5/3690:3694,
1/L5/3821:3826
No text annotation
homologous
J4_8P9A_017
J4_07509.2
J4_9B11_0091/L5/3696:3698,
1/L5/3752:3754,
1/L5/3770:3780,
1/L5/3814:3819
No text annotation
J4_9B11_0101/L5/4231:4235,
1/L5/4289:4291,
1/L5/4318:4319,
1/L5/4328:4330
No text annotation
J4_9B11_0111/L5/4231:4235,
1/L5/4289:4293,
1/L5/4317:4319,
1/L5/4328:4330
No text annotation
homologous
J4_8CRE_008
J4_04930.6
J4_9B11_0121/L5/4587:4590,
1/L5/4620:4621,
1/L5/4676:4678,
1/L5/4712:4715
No text annotation
J4_9B11_0131/S2/98:106,
1/S2/355:357,
1/S2/405:409,
1/S2/431:432
No text annotation
homologous
J4_8P9A_021
J4_15241.1
J4_9B11_0141/S2/671:673,
1/S2/1032:1037,
1/S2/1078:1089,
1/S2/1160:1161
No text annotation
homologous
J4_8CRE_022
J4_61885.6
J4_9B11_0151/S2/685:747,
1/S2/795:800,
1/S2/865:874,
1/S2/912:917
No text annotation
J5_9B11_0011/L5/20:21,
1/L8/35:42,
1/L8/101:106,
1/L8/113:114,
1/L8/136:137
No text annotation
J5_9B11_0021/L5/1335:1340,
1/L5/1516:1519,
1/L5/1658:1661,
1/L5/2288:2290,
1/L5/2345:2351
No text annotation
homologous
J5_8CRE_002
J5_63811.1
J5_9B11_0031/L5/2855:2863,
1/L5/2887:2888,
1/L5/3613:3614,
1/L5/3618:3626,
1/L5/3835:3837
No text annotation
homologous
J5_8CRE_004
J5_62523.6
J5_9B11_0041/L5/3902:3910,
1/L5/4392:4400,
1/L5/4444:4453,
1/L5/4528:4534,
1/L5/4552:4558
No text annotation
J5_9B11_0051/L5/3920:3923,
1/L5/4188:4191,
1/L5/4204:4205,
1/L5/4227:4228,
1/L5/4375:4381
No text annotation
homologous
J5_8P9A_015
J5_08912.1
J5_9B11_0061/S2/30:34,
1/S2/521:527,
1/S2/558:565,
1/S2/585:595,
1/S2/641:644
No text annotation
J5_9B11_0071/S2/53:56,
1/S2/89:96,
1/S2/434:436,
1/S2/457:459,
1/S2/470:474
No text annotation
homologous
J5_8CRE_020
J5_59910.6
J5_9B11_0081/S2/125:129,
1/S2/183:185,
1/S2/214:215,
1/S2/310:312,
1/S2/337:338
No text annotation
J6_9B11_0011/L5/21:26,
1/L5/57:67,
1/L5/74:78,
1/L5/105:109,
1/L5/332:339,
1/L8/33:35
No text annotation
J6_9B11_0021/L5/1352:1355,
1/L5/1384:1388,
1/L5/1395:1399,
1/L5/1418:1421,
1/L5/1464:1466,
1/L5/1499:1504
No text annotation
J6_9B11_0031/L5/3920:3923,
1/L5/4188:4191,
1/L5/4204:4205,
1/L5/4227:4230,
1/L5/4331:4342,
1/L5/4370:4381
No text annotation
J7_9B11_0011/L5/1666:1671,
1/L5/1684:1685,
1/L5/1852:1855,
1/L5/1879:1884,
1/L5/1895:1899,
1/L5/2077:2078,
1/L5/2278:2283
No text annotation

Problematic loops

No problematic loops


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