HL_9B11_029

3D structure

PDB id

9B11 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human unrotated hibernating without CCDC124 state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.77 Å

Loop

Sequence

GGGCCGAAACGAUCU

Length

15 nucleotides

Bulged bases

9B11|1|L5|C|1763, 9B11|1|L5|A|1765, 9B11|1|L5|A|1766, 9B11|1|L5|A|1767, 9B11|1|L5|G|1769

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9B11|1|L5|G|1759
9B11|1|L5|G|1760
9B11|1|L5|G|1761
9B11|1|L5|C|1762
9B11|1|L5|C|1763
9B11|1|L5|G|1764
9B11|1|L5|A|1765
9B11|1|L5|A|1766
9B11|1|L5|A|1767
9B11|1|L5|C|1768
9B11|1|L5|G|1769
9B11|1|L5|A|1770
9B11|1|L5|U|1771
9B11|1|L5|C|1772
9B11|1|L5|U|1773

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LJ

60S ribosomal protein L11

Chain SP

Small ribosomal subunit protein uS19

Chain SS

40S ribosomal protein S18