HL_9B11_046

3D structure

PDB id

9B11 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human unrotated hibernating without CCDC124 state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.77 Å

Loop

Sequence

CGGUUCCGG

Length

9 nucleotides

Bulged bases

9B11|1|L5|U|2707, 9B11|1|L5|U|2708, 9B11|1|L5|C|2709, 9B11|1|L5|G|2711

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9B11|1|L5|C|2704
9B11|1|L5|G|2705
9B11|1|L5|G|2706
9B11|1|L5|U|2707
9B11|1|L5|U|2708
9B11|1|L5|C|2709
9B11|1|L5|C|2710
9B11|1|L5|G|2711
9B11|1|L5|G|2712

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain LU

Heparin-binding protein HBp15

Chain LX

60S ribosomal protein L23a