HL_9B11_060

3D structure

PDB id

9B11 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human unrotated hibernating without CCDC124 state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.77 Å

Loop

Sequence

GAGGUGUAGAAUAAGUGGGAGGCCCCCGGCGCCGGUCCGCCGGCCCUGCGGGCCGCCGGUGAAAUACCACUACUC

Length

75 nucleotides

Bulged bases

9B11|1|L5|G|3956, 9B11|1|L5|A|3962, 9B11|1|L5|G|3974, 9B11|1|L5|C|3978, 9B11|1|L5|C|3979, 9B11|1|L5|G|3980, 9B11|1|L5|G|3981, 9B11|1|L5|C|3982, 9B11|1|L5|G|3983, 9B11|1|L5|C|3984, 9B11|1|L5|C|3985, 9B11|1|L5|G|4018, 9B11|1|L5|G|4019, 9B11|1|L5|U|4020, 9B11|1|L5|C|4021, 9B11|1|L5|C|4022, 9B11|1|L5|G|4023, 9B11|1|L5|C|4024, 9B11|1|L5|C|4025, 9B11|1|L5|G|4026, 9B11|1|L5|G|4027, 9B11|1|L5|C|4028, 9B11|1|L5|C|4029, 9B11|1|L5|C|4030, 9B11|1|L5|U|4031, 9B11|1|L5|G|4032, 9B11|1|L5|C|4033, 9B11|1|L5|G|4035, 9B11|1|L5|C|4038, 9B11|1|L5|G|4042, 9B11|1|L5|G|4043, 9B11|1|L5|U|4044, 9B11|1|L5|C|4052, 9B11|1|L5|A|4053, 9B11|1|L5|C|4057, 9B11|1|L5|U|4058

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9B11|1|L5|G|3953
9B11|1|L5|A|3954
9B11|1|L5|G|3955
9B11|1|L5|G|3956
9B11|1|L5|U|3957
9B11|1|L5|G|3958
9B11|1|L5|U|3959
9B11|1|L5|A|3960
9B11|1|L5|G|3961
9B11|1|L5|A|3962
9B11|1|L5|A|3963
9B11|1|L5|U|3964
9B11|1|L5|A|3965
9B11|1|L5|A|3966
9B11|1|L5|G|3967
9B11|1|L5|U|3968
9B11|1|L5|G|3969
9B11|1|L5|G|3970
9B11|1|L5|G|3971
9B11|1|L5|A|3972
9B11|1|L5|G|3973
9B11|1|L5|G|3974
9B11|1|L5|C|3975
9B11|1|L5|C|3976
9B11|1|L5|C|3977
9B11|1|L5|C|3978
9B11|1|L5|C|3979
9B11|1|L5|G|3980
9B11|1|L5|G|3981
9B11|1|L5|C|3982
9B11|1|L5|G|3983
9B11|1|L5|C|3984
9B11|1|L5|C|3985
9B11|1|L5|G|4018
9B11|1|L5|G|4019
9B11|1|L5|U|4020
9B11|1|L5|C|4021
9B11|1|L5|C|4022
9B11|1|L5|G|4023
9B11|1|L5|C|4024
9B11|1|L5|C|4025
9B11|1|L5|G|4026
9B11|1|L5|G|4027
9B11|1|L5|C|4028
9B11|1|L5|C|4029
9B11|1|L5|C|4030
9B11|1|L5|U|4031
9B11|1|L5|G|4032
9B11|1|L5|C|4033
9B11|1|L5|G|4034
9B11|1|L5|G|4035
9B11|1|L5|G|4036
9B11|1|L5|C|4037
9B11|1|L5|C|4038
9B11|1|L5|G|4039
9B11|1|L5|C|4040
9B11|1|L5|C|4041
9B11|1|L5|G|4042
9B11|1|L5|G|4043
9B11|1|L5|U|4044
9B11|1|L5|G|4045
9B11|1|L5|A|4046
9B11|1|L5|A|4047
9B11|1|L5|A|4048
9B11|1|L5|U|4049
9B11|1|L5|A|4050
9B11|1|L5|C|4051
9B11|1|L5|C|4052
9B11|1|L5|A|4053
9B11|1|L5|C|4054
9B11|1|L5|U|4055
9B11|1|L5|A|4056
9B11|1|L5|C|4057
9B11|1|L5|U|4058
9B11|1|L5|C|4059

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Et

Transfer RNA; tRNA

Chain Lz

60S ribosomal protein L10a