HL_9B11_063

3D structure

PDB id

9B11 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human unrotated hibernating without CCDC124 state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.77 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

9B11|1|L5|G|4195

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B11_063 not in the Motif Atlas

Homologous match to HL_8P9A_165

Geometric discrepancy: 0.1131

The information below is about HL_8P9A_165

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9B11|1|L5|C|4193
9B11|1|L5|U|4194
9B11|1|L5|G|4195
9B11|1|L5|G|4196
9B11|1|L5|G|4197
9B11|1|L5|G|4198
9B11|1|L5|C|4199
9B11|1|L5|G|4200
9B11|1|L5|G|4201

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LI

60S ribosomal protein L10-like

Chain Lb

60S ribosomal protein L29