HL_9B11_080

3D structure

PDB id

9B11 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human unrotated hibernating without CCDC124 state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.77 Å

Loop

Sequence

CUCCCUCG

Length

8 nucleotides

Bulged bases

9B11|1|L5|C|5023, 9B11|1|L5|C|5024, 9B11|1|L5|C|5025, 9B11|1|L5|U|5026, 9B11|1|L5|C|5027

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B11_080 not in the Motif Atlas

Geometric match to HL_8CRE_052

Geometric discrepancy: 0.3176

The information below is about HL_8CRE_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

9B11|1|L5|C|5021
9B11|1|L5|U|5022
9B11|1|L5|C|5023
9B11|1|L5|C|5024
9B11|1|L5|C|5025
9B11|1|L5|U|5026
9B11|1|L5|C|5027
9B11|1|L5|G|5028

Current chains

Chain L5

28S rRNA

Nearby chains

Chain SI

40S ribosomal protein S8