HL_9B11_103

3D structure

PDB id

9B11 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human unrotated hibernating without CCDC124 state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.77 Å

Loop

Sequence

UGUUCAAAG

Length

9 nucleotides

Bulged bases

9B11|1|S2|G|821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B11_103 not in the Motif Atlas

Homologous match to HL_8CRE_207

Geometric discrepancy: 0.1468

The information below is about HL_8CRE_207

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9B11|1|S2|U|820
9B11|1|S2|G|821
9B11|1|S2|U|822
9B11|1|S2|U|823
9B11|1|S2|C|824
9B11|1|S2|A|825
9B11|1|S2|A|826
9B11|1|S2|A|827
9B11|1|S2|G|828

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SE

Small ribosomal subunit protein eS4, X isoform

Chain SJ

40S ribosomal protein S9

Chain SY

40S ribosomal protein S24