HL_9B11_115

3D structure

PDB id

9B11 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human unrotated hibernating without CCDC124 state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.77 Å

Loop

Sequence

GUUAAUUC

Length

8 nucleotides

Bulged bases

9B11|1|S2|U|1371

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B11_115 not in the Motif Atlas

Homologous match to HL_8CRE_219

Geometric discrepancy: 0.1411

The information below is about HL_8CRE_219

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.1

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

18

Unit IDs

9B11|1|S2|G|1366
9B11|1|S2|U|1367
9B11|1|S2|U|1368
9B11|1|S2|A|1369
9B11|1|S2|A|1370
9B11|1|S2|U|1371
9B11|1|S2|U|1372
9B11|1|S2|C|1373

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SR

40S ribosomal protein S17