HL_9B24_036

3D structure

PDB id

9B24 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT strain gidB mutant mycobacterial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

UAGGAGGCUG

Length

10 nucleotides

Bulged bases

9B24|1|Y|A|57, 9B24|1|Y|G|58, 9B24|1|Y|G|59

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B24_036 not in the Motif Atlas

Homologous match to HL_5J7L_134

Geometric discrepancy: 0.4559

The information below is about HL_5J7L_134

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35677.3

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9B24|1|Y|U|56
9B24|1|Y|A|57
9B24|1|Y|G|58
9B24|1|Y|G|59
9B24|1|Y|A|60
9B24|1|Y|G|61
9B24|1|Y|G|62
9B24|1|Y|C|63
9B24|1|Y|U|64
9B24|1|Y|G|65

Current chains

Chain Y

23S rRNA

Nearby chains

Chain p

Large ribosomal subunit protein uL23

Chain u

Large ribosomal subunit protein uL29

Chain z

Large ribosomal subunit protein bL34