RNA 3D Hub //

9B24 Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_9B24_0071/A/259:267GNRA related
homologous
HL_5J7L_006
NA
HL_9B24_0091/A/320:333No text annotation
HL_9B24_0171/A/706:711GNRA
homologous
HL_4LFB_016
HL_34789.4
HL_9B24_0211/A/879:884GNRA
homologous
HL_4LFB_020
HL_34789.4
HL_9B24_0251/A/1056:1061GNRA
homologous
HL_5J7L_023
NA
HL_9B24_0371/Y/84:93Pseudoknot geometry
homologous
HL_4WF9_002
HL_00911.2
HL_9B24_0381/Y/120:125No text annotation
homologous
HL_5J7L_136
NA
HL_9B24_0391/Y/134:141GNRA wlth tandem sheared
homologous
HL_4WF9_004
HL_98423.3
HL_9B24_0411/Y/193:200No text annotation
homologous
HL_4WF9_006
HL_48677.1
HL_9B24_0431/Y/246:252No text annotation
homologous
HL_7A0S_008
HL_76371.2
HL_9B24_0451/Y/387:394T-loop with 2 stacked bulged bases
homologous
HL_4WF9_010
HL_13999.3
HL_9B24_0461/Y/401:405No text annotation
homologous
HL_5J7L_143
NA
HL_9B24_0471/Y/409:417T-loop with unstacked turn
homologous
HL_5J7L_144
NA
HL_9B24_0481/Y/469:481No text annotation
homologous
HL_4WF9_013
HL_69139.1
HL_9B24_0491/Y/550:555GNRA
homologous
HL_4WF9_015
HL_34789.4
HL_9B24_0501/Y/575:580GNRA
homologous
HL_9DFE_015
HL_34789.4
HL_9B24_0521/Y/658:667T-loop with 2 stacked bulged bases
homologous
HL_5J7L_150
NA
HL_9B24_0581/Y/859:868No text annotation
homologous
HL_4WF9_023
HL_50204.1
HL_9B24_0591/Y/894:900No text annotation
homologous
HL_5J7L_156
NA
HL_9B24_0601/Y/941:946No text annotation
homologous
HL_7A0S_024
HL_27530.1
HL_9B24_0621/Y/1072:1079GNRA
homologous
HL_7A0S_026
HL_34789.4
HL_9B24_0631/Y/1096:1103No text annotation
homologous
HL_5J7L_160
NA
HL_9B24_0661/Y/1336:1341GNRA
homologous
HL_7A0S_031
HL_34789.4
HL_9B24_0671/Y/1396:1404T-loop with 2 stacked bulged bases
homologous
HL_4WF9_032
HL_33597.3
HL_9B24_0681/Y/1439:1445Pseudoknot geometry with 3' bulge
homologous
HL_5J7L_166
NA
HL_9B24_0701/Y/1504:1513No text annotation
homologous
HL_4WF9_035
HL_77449.1
HL_9B24_0721/Y/1671:1682No text annotation
HL_9B24_0751/Y/1785:1788Mini UNCG
homologous
HL_5J7L_172
NA
HL_9B24_0761/Y/1830:1837No text annotation
homologous
HL_4WF9_038
HL_28592.2
HL_9B24_0771/Y/1848:1854GNRA
homologous
HL_5J7L_174
NA
HL_9B24_0781/Y/1909:1914UNCG
homologous
HL_7A0S_042
HL_61337.4
HL_9B24_0801/Y/1969:1973No text annotation
homologous
HL_9DFE_042
HL_80709.5
HL_9B24_0811/Y/1994:2004No text annotation
homologous
HL_4WF9_043
HL_87681.1
HL_9B24_0821/Y/2023:2028No text annotation
homologous
HL_4WF9_044
NA
HL_9B24_0851/Y/2173:2181No text annotation
homologous
HL_4WF9_046
HL_61418.2
HL_9B24_0861/Y/2251:2260No text annotation
homologous
HL_5J7L_183
NA
HL_9B24_0891/Y/2488:2500No text annotation
homologous
HL_5J7L_187
NA
HL_9B24_0971/Y/2775:2781No text annotation
homologous
HL_4WF9_058
HL_48677.1
HL_9B24_1001/Y/2925:2930Ribsomal LSU H95
homologous
HL_7A0S_064
HL_12125.2
HL_9B24_1011/Y/2969:2983No text annotation
homologous
HL_4WF9_062
HL_53269.2
HL_9B24_1031/Y/3040:3048No text annotation
homologous
HL_5J7L_201
NA

Problematic loops

#loop idProblemSequence
HL_9B24_001No text annotation
HL_9B24_002No text annotation
HL_9B24_003UNCG variation
HL_9B24_004GNRA
HL_9B24_005No text annotation
HL_9B24_006No text annotation
HL_9B24_008GNRA
HL_9B24_010UNCG
HL_9B24_011GNRA
HL_9B24_012UNCG
HL_9B24_013No text annotation
HL_9B24_014GNRA variation
HL_9B24_015No text annotation
HL_9B24_016No text annotation
HL_9B24_018No text annotation
HL_9B24_019No text annotation
HL_9B24_020GNRA
HL_9B24_022No text annotation
HL_9B24_023No text annotation
HL_9B24_024No text annotation
HL_9B24_026T-loop related
HL_9B24_027No text annotation
HL_9B24_028GNRA
HL_9B24_029GNRA
HL_9B24_030T-loop with 3 stacked bulged bases
HL_9B24_031No text annotation
HL_9B24_032No text annotation
HL_9B24_033GNRA
HL_9B24_034No text annotation
HL_9B24_035UNCG variation
HL_9B24_036No text annotation
HL_9B24_040No text annotation
HL_9B24_042No text annotation
HL_9B24_044No text annotation
HL_9B24_051No text annotation
HL_9B24_053No text annotation
HL_9B24_054GNRA
HL_9B24_055GNRA
HL_9B24_056No text annotation
HL_9B24_057GNRA wlth tandem sheared
HL_9B24_061No text annotation
HL_9B24_064No text annotation
HL_9B24_065No text annotation
HL_9B24_069GNRA
HL_9B24_071No text annotation
HL_9B24_073Pseudoknot geometry with 3' bulge
HL_9B24_074No text annotation
HL_9B24_079No text annotation
HL_9B24_083No text annotation
HL_9B24_084No text annotation
HL_9B24_087No text annotation
HL_9B24_088No text annotation
HL_9B24_090No text annotation
HL_9B24_091Pseudoknot geometry
HL_9B24_092GNRA with extra cWW
HL_9B24_093GNRA
HL_9B24_094No text annotation
HL_9B24_095No text annotation
HL_9B24_096GNRA variation
HL_9B24_098GNRA
HL_9B24_099GNRA
HL_9B24_102No text annotation
HL_9B24_104GNRA

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_9B24_0031/A/34:36,
1/A/532:533		Single bulged G
homologous
IL_4LFB_001
IL_28408.2
IL_9B24_0131/A/242:247,
1/A/277:284		Kink-turn with non-sequential stacking
homologous
IL_5J7L_014
NA
IL_9B24_0171/A/371:375,
1/A/389:390		C-loop
homologous
IL_5J7L_018
NA
IL_9B24_0201/A/440:442,
1/A/472:477		No text annotation
homologous
IL_5J7L_021
NA
IL_9B24_0291/A/642:646,
1/A/720:723		Tandem non-canonical cWW pairs
homologous
IL_5J7L_033
NA
IL_9B24_0321/A/754:758,
1/A/784:785		Left turn
homologous
IL_5J7L_036
NA
IL_9B24_0341/A/869:876,
1/A/887:892		8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_5J7L_038
NA
IL_9B24_0351/A/904:909,
1/A/1373:1378		Triple non-canonical cWW pairs
geometric
IL_4LFB_065
IL_71154.3
IL_9B24_0391/A/1032:1038,
1/A/1180:1187		No text annotation
geometric
IL_8P9A_439
IL_99893.1
IL_9B24_0401/A/1037:1038,
1/A/1180:1184		Minor groove platform
homologous
IL_5J7L_048
NA
IL_9B24_0501/A/1413:1418,
1/A/1450:1454		Triple sheared related
homologous
IL_5J7L_063
NA
IL_9B24_0521/A/1423:1426,
1/A/1443:1445		Isolated tHS basepair with bulges
geometric
IL_4V9F_076
IL_87316.2
IL_9B24_0571/U/24:30,
1/U/56:61		No text annotation
geometric
IL_9E6Q_106
IL_41504.1
IL_9B24_0601/U/72:80,
1/U/95:103		Bacterial 5S Loop E
homologous
IL_5J7L_359
NA
IL_9B24_0611/Y/21:27,
1/Y/597:603		Triple sheared with non-canonical cWW
homologous
IL_7A0S_001
IL_22311.1
IL_9B24_0621/Y/33:34,
1/Y/530:532		Single bulged A
homologous
IL_9DFE_002
IL_14190.2
IL_9B24_0631/Y/77:82,
1/Y/95:103		Kink-turn
geometric
IL_4LFB_031
IL_95727.1
IL_9B24_0651/Y/187:193,
1/Y/200:207		8x7 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_250
NA
IL_9B24_0661/Y/239:245,
1/Y/253:258		7x6 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_251
NA
IL_9B24_0681/Y/373:376,
1/Y/425:430		No text annotation
homologous
IL_5J7L_254
NA
IL_9B24_0691/Y/382:384,
1/Y/397:398		Single bulged U
geometric
IL_3TZR_002
IL_97561.5
IL_9B24_0701/Y/569:572,
1/Y/583:596		No text annotation
homologous
IL_5J7L_255
NA
IL_9B24_0711/Y/623:626,
1/Y/646:649		Double sheared
homologous
IL_5J7L_256
NA
IL_9B24_0721/Y/630:631,
1/Y/640:642		No text annotation
IL_9B24_0741/Y/683:687,
1/Y/778:781		Tandem non-canonical cWW pairs
geometric
IL_1MFQ_004
IL_15225.2
IL_9B24_0751/Y/699:703,
1/Y/712:716		No text annotation
homologous
IL_9DFE_014
IL_66798.3
IL_9B24_0761/Y/787:789,
1/Y/921:923		Isolated non-canonical cWW pair
homologous
IL_9DFE_015
IL_01003.4
IL_9B24_0771/Y/789:794,
1/Y/913:921		No text annotation
IL_9B24_0781/Y/812:813,
1/Y/878:880		Single bulged A
homologous
IL_5J7L_261
NA
IL_9B24_0791/Y/817:822,
1/Y/839:845		No text annotation
geometric
IL_8C3A_507
NA
IL_9B24_0801/Y/853:855,
1/Y/872:873		Major groove platform
homologous
IL_4WF9_026
IL_48076.8
IL_9B24_0811/Y/890:892,
1/Y/902:906		Multiple bulged bases
geometric
IL_5J7L_265
NA
IL_9B24_0831/Y/959:964,
1/Y/1043:1051		No text annotation
IL_9B24_0841/Y/961:964,
1/Y/1043:1048		No text annotation
IL_9B24_0851/Y/971:977,
1/Y/1030:1036		7x7 Sarcin-Ricin with intercalated A; G-bulge
homologous
IL_5J7L_270
NA
IL_9B24_0861/Y/977:978,
1/Y/1028:1030		Minor groove platform
homologous
IL_4WF9_032
IL_34520.3
IL_9B24_0871/Y/978:984,
1/Y/1024:1028		No text annotation
IL_9B24_0911/Y/1066:1067,
1/Y/1084:1086		Single bulged G
geometric
IL_4LVW_002
IL_28408.2
IL_9B24_0921/Y/1112:1114,
1/Y/1278:1279		Single bulged C
homologous
IL_4WF9_035
IL_05642.3
IL_9B24_0931/Y/1116:1120,
1/Y/1272:1276		UAA/GAN
homologous
IL_7A0S_033
IL_08938.1
IL_9B24_0941/Y/1122:1129,
1/Y/1269:1270		SSU/LSU pseudoknot
homologous
IL_4WF9_037
IL_11411.1
IL_9B24_0951/Y/1129:1131,
1/Y/1268:1269		Single bulged U
homologous
IL_4WF9_038
IL_97561.5
IL_9B24_0961/Y/1136:1142,
1/Y/1258:1263		Kink-turn related
homologous
IL_5J7L_280
NA
IL_9B24_0971/Y/1142:1148,
1/Y/1242:1258		No text annotation
homologous
IL_5J7L_281
NA
IL_9B24_0981/Y/1149:1152,
1/Y/1239:1241		Isolated non-canonical cWW pair
homologous
IL_5J7L_282
NA
IL_9B24_1021/Y/1311:1313,
1/Y/1362:1365		Isolated cWS basepair
homologous
IL_7A0S_041
IL_42997.5
IL_9B24_1031/Y/1322:1329,
1/Y/1349:1353		Kink-turn
homologous
IL_5J7L_288
NA
IL_9B24_1041/Y/1333:1334,
1/Y/1343:1345		Single bulged A
geometric
IL_2VPL_002
IL_14190.2
IL_9B24_1051/Y/1377:1384,
1/Y/2235:2241		8x7 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_289
NA
IL_9B24_1061/Y/1425:1428,
1/Y/1821:1822		Major groove platform; stack outside cWW
geometric
IL_5J7L_290
NA
IL_9B24_1071/Y/1434:1438,
1/Y/1446:1448		C-loop
homologous
IL_5J7L_291
NA
IL_9B24_1081/Y/1466:1468,
1/Y/1494:1495		Single stack bend with SAM intercalation
geometric
IL_6FZ0_001
IL_75501.2
IL_9B24_1091/Y/1466:1470,
1/Y/1491:1495		UAA/GAN
geometric
IL_7A0S_048
IL_89021.4
IL_9B24_1101/Y/1468:1470,
1/Y/1491:1494		No text annotation
IL_9B24_1171/Y/1658:1661,
1/Y/1771:1775		tSH-tHW
homologous
IL_5J7L_297
NA
IL_9B24_1181/Y/1689:1692,
1/Y/1742:1746		No text annotation
homologous
IL_5J7L_299
NA
IL_9B24_1191/Y/1695:1699,
1/Y/1735:1739		tSH-tHW-tHS
homologous
IL_5J7L_300
NA
IL_9B24_1201/Y/1702:1703,
1/Y/1726:1732		No text annotation
homologous
IL_9DFE_060
IL_46086.1
IL_9B24_1221/Y/1869:1874,
1/Y/2228:2230		No text annotation
IL_9B24_1231/Y/1881:1883,
1/Y/2219:2221		Isolated tWW turn
homologous
IL_4WF9_063
IL_10432.1
IL_9B24_1241/Y/1904:1909,
1/Y/1914:1920		tSH-tSH-tHH-tHS
homologous
IL_5J7L_308
NA
IL_9B24_1251/Y/1930:1934,
1/Y/1960:1963		tWW and near cWH
geometric
IL_6DLR_005
IL_45860.1
IL_9B24_1261/Y/1937:1942,
1/Y/1952:1957		No text annotation
geometric
IL_8ZA4_001
NA
IL_9B24_1271/Y/1944:1945,
1/Y/1948:1950		Single bulged C
geometric
IL_5J7L_311
NA
IL_9B24_1281/Y/1987:1988,
1/Y/2204:2206		Single bulged A
homologous
IL_4WF9_068
IL_14190.2
IL_9B24_1291/Y/2015:2021,
1/Y/2030:2038		Kink-turn related
homologous
IL_7A0S_065
IL_17069.6
IL_9B24_1301/Y/2054:2057,
1/Y/2126:2127		Minor groove platform, major groove intercalation
homologous
IL_5J7L_314
NA
IL_9B24_1311/Y/2058:2059,
1/Y/2122:2125		Major groove intercalation
homologous
IL_5J7L_315
NA
IL_9B24_1361/Y/2157:2158,
1/Y/2188:2191		Bulged stacked bases
geometric
IL_7A0S_071
IL_24886.2
IL_9B24_1371/Y/2158:2169,
1/Y/2185:2188		No text annotation
homologous
IL_5J7L_319
NA
IL_9B24_1381/Y/2274:2276,
1/Y/2841:2842		Major groove platform
homologous
IL_5J7L_320
NA
IL_9B24_1391/Y/2278:2280,
1/Y/2836:2839		No text annotation
homologous
IL_5J7L_321
NA
IL_9B24_1401/Y/2293:2294,
1/Y/2662:2665		Minor groove platform
homologous
IL_4WF9_081
IL_34520.3
IL_9B24_1481/Y/2677:2678,
1/Y/2722:2724		Single stack bend
homologous
IL_5J7L_391
NA
IL_9B24_1501/Y/2681:2683,
1/Y/2717:2718		Major groove platform
homologous
IL_7A0S_085
IL_48076.8
IL_9B24_1511/Y/2683:2685,
1/Y/2713:2717		No text annotation
homologous
IL_9DFE_094
IL_36931.2
IL_9B24_1541/Y/2731:2732,
1/Y/2804:2806		Major groove platform
homologous
IL_4WF9_094
IL_46637.2
IL_9B24_1551/Y/2734:2736,
1/Y/2798:2802		Isolated non-canonical cWW with bulges
homologous
IL_7A0S_089
IL_68118.4
IL_9B24_1561/Y/2736:2737,
1/Y/2795:2798		Multiple bulged bases
homologous
IL_7A0S_090
IL_44609.2
IL_9B24_1591/Y/2860:2864,
1/Y/2998:3006		tSH-tHS-tHW
homologous
IL_5J7L_345
NA
IL_9B24_1611/Y/2904:2908,
1/Y/2949:2951		C-loop
homologous
IL_9DFE_103
IL_63596.12
IL_9B24_1621/Y/2911:2915,
1/Y/2942:2946		UAA/GAN related, with intercalation
homologous
IL_4WF9_102
IL_82016.1
IL_9B24_1631/Y/2919:2920,
1/Y/2935:2938		Multiple bulged bases
homologous
IL_5J7L_349
NA
IL_9B24_1641/Y/2961:2966,
1/Y/2986:2991		UAA/GAN with extra cWW
homologous
IL_5J7L_350
NA
IL_9B24_1651/Y/3059:3061,
1/Y/3098:3101		No text annotation
IL_9B24_1671/Y/3068:3073,
1/Y/3086:3090		tHS double platform
homologous
IL_4WF9_108
IL_48489.1

Problematic loops

#loop idProblemSequence
IL_9B24_001No text annotation
IL_9B24_002Kink-turn
IL_9B24_004Single bulged A
IL_9B24_005Multiple bulged bases
IL_9B24_006Minor groove platform with extra cWW
IL_9B24_007Minor groove platform
IL_9B24_008No text annotation
IL_9B24_009Isolated non-canonical cWW pair
IL_9B24_010No text annotation
IL_9B24_011tWH-tWH-tHW-tHW
IL_9B24_012No text annotation
IL_9B24_014No text annotation
IL_9B24_015C-loop
IL_9B24_016Single bulged U
IL_9B24_018Single bulged G
IL_9B24_019No text annotation
IL_9B24_0216x5 Sarcin-Ricin; G-bulge
IL_9B24_022No text annotation
IL_9B24_023SSU/LSU pseudoknot
IL_9B24_024Kink-turn related
IL_9B24_025No text annotation
IL_9B24_026No text annotation
IL_9B24_027Major groove platform; stack outside cWW
IL_9B24_028Major groove platform
IL_9B24_030Triple non-canonical cWW pairs
IL_9B24_031Kink-turn
IL_9B24_033tSH-tHW-tHS
IL_9B24_036Minor groove platform
IL_9B24_037Single bulged U
IL_9B24_038No text annotation
IL_9B24_041Single bulged A
IL_9B24_042Isolated non-canonical cWW pair
IL_9B24_043No text annotation
IL_9B24_044Minor groove platform
IL_9B24_045No text annotation
IL_9B24_046No text annotation
IL_9B24_047180 degree turn
IL_9B24_048Double sheared with non-canonical cWW
IL_9B24_049Tandem non-canonical cWW pairs
IL_9B24_051Isolated non-canonical cWW pair
IL_9B24_053No text annotation
IL_9B24_054Single bulged U
IL_9B24_055Single bulged A
IL_9B24_056Major groove intercalation
IL_9B24_058Major groove minor groove platform; mini C-loop
IL_9B24_059No text annotation
IL_9B24_064Single stack bend
IL_9B24_067Single bulged U
IL_9B24_073Isolated non-canonical cWW pair
IL_9B24_082No text annotation
IL_9B24_088Isolated cWS basepair
IL_9B24_089No text annotation
IL_9B24_090No text annotation
IL_9B24_099Kink-turn
IL_9B24_100No text annotation
IL_9B24_101No text annotation
IL_9B24_111tSH-tHW-tHS
IL_9B24_112No text annotation
IL_9B24_113Isolated non-canonical cWW pair
IL_9B24_114No text annotation
IL_9B24_115No text annotation
IL_9B24_116Tandem non-canonical cWW pairs
IL_9B24_121Major groove intercalation
IL_9B24_132No text annotation
IL_9B24_133UAA/GAN with extra stack
IL_9B24_134Quadruple sheared
IL_9B24_135No text annotation
IL_9B24_141No text annotation
IL_9B24_142Isolated non-canonical cWW pair
IL_9B24_143Isolated non-canonical cWW pair
IL_9B24_144Single bulged G
IL_9B24_145No text annotation
IL_9B24_146Double sheared
IL_9B24_147Single bulged U
IL_9B24_149Major groove platform
IL_9B24_152Isolated non-canonical cWW pair
IL_9B24_153Double sheared with non-canonical cWW
IL_9B24_157Major groove platform with intercalation
IL_9B24_158Single bulged A
IL_9B24_160Sarcin-Ricin target in LSU H95; G-bulge
IL_9B24_166Decoding loop related

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_9B24_0011/A/50:56,
1/A/359:367,
1/A/393:395		No text annotation
homologous
J3_4LFB_014
J3_63856.1
J3_9B24_0021/A/652:653,
1/A/697:705,
1/A/712:714		No text annotation
homologous
J3_5J7L_003
NA
J3_9B24_0091/A/1053:1054,
1/A/1063:1066,
1/A/1079:1082		No text annotation
homologous
J3_4LFB_017
J3_11018.1
J3_9B24_0121/U/11:17,
1/U/69:71,
1/U/104:107		No text annotation
J3_9B24_0131/Y/27:28,
1/Y/562:569,
1/Y/596:597		No text annotation
homologous
J3_5J7L_036
NA
J3_9B24_0141/Y/29:32,
1/Y/533:549,
1/Y/556:561		No text annotation
homologous
J3_9DFE_003
J3_07616.1
J3_9B24_0151/Y/53:54,
1/Y/67:73,
1/Y/107:111		No text annotation
homologous
J3_5J7L_037
NA
J3_9B24_0161/Y/798:804,
1/Y/888:890,
1/Y/906:909		No text annotation
homologous
J3_5J7L_038
NA
J3_9B24_0171/Y/813:815,
1/Y/847:851,
1/Y/875:878		No text annotation
homologous
J3_5J7L_039
NA
J3_9B24_0181/Y/1413:1418,
1/Y/1843:1845,
1/Y/1857:1860		No text annotation
homologous
J3_5J7L_041
NA
J3_9B24_0191/Y/1421:1424,
1/Y/1823:1829,
1/Y/1838:1840		No text annotation
homologous
J3_7A0S_007
J3_47341.1
J3_9B24_0201/Y/1458:1465,
1/Y/1496:1500,
1/Y/1517:1520		No text annotation
J3_9B24_0221/Y/1646:1650,
1/Y/1784:1785,
1/Y/1788:1793		No text annotation
geometric
J3_4V9F_017
J3_08594.1
J3_9B24_0271/Y/2741:2744,
1/Y/2769:2771,
1/Y/2785:2791		No text annotation
homologous
J3_4WF9_009
J3_32601.6
J3_9B24_0281/Y/3035:3037,
1/Y/3051:3057,
1/Y/3103:3107		No text annotation
J4_9B24_0011/A/111:119,
1/A/238:240,
1/A/286:289,
1/A/311:312		No text annotation
J4_9B24_0031/A/922:930,
1/A/1214:1222,
1/A/1278:1290,
1/A/1311:1325		No text annotation
J4_9B24_0041/Y/268:331,
1/Y/350:369,
1/Y/433:463,
1/Y/487:514		No text annotation
J4_9B24_0051/Y/378:382,
1/Y/398:401,
1/Y/405:407,
1/Y/419:423		No text annotation
homologous
J4_4WF9_002
J4_16174.1
J4_9B24_0061/Y/1385:1391,
1/Y/1409:1410,
1/Y/1863:1866,
1/Y/2233:2234		No text annotation
homologous
J4_5J7L_021
NA
J4_9B24_0071/Y/1425:1429,
1/Y/1453:1458,
1/Y/1520:1521,
1/Y/1815:1822		No text annotation
homologous
J4_4WF9_005
J4_77353.1
J4_9B24_0081/Y/1428:1429,
1/Y/1453:1458,
1/Y/1520:1521,
1/Y/1815:1821		No text annotation
homologous
J4_4WF9_006
J4_48150.1
J4_9B24_0091/Y/1664:1667,
1/Y/1686:1688,
1/Y/1747:1751,
1/Y/1762:1768		No text annotation
J4_9B24_0101/Y/1989:1993,
1/Y/2005:2009,
1/Y/2044:2047,
1/Y/2199:2203		No text annotation
homologous
J4_5J7L_025
NA
J4_9B24_0111/Y/2050:2052,
1/Y/2129:2130,
1/Y/2148:2157,
1/Y/2191:2196		No text annotation
homologous
J4_5J7L_026
NA
J4_9B24_0131/Y/2867:2870,
1/Y/2898:2900,
1/Y/2955:2959,
1/Y/2993:2995		No text annotation
homologous
J4_5J7L_028
NA
J5_9B24_0021/A/40:47,
1/A/399:406,
1/A/436:442,
1/A/472:480,
1/A/525:528		No text annotation
J5_9B24_0031/A/56:65,
1/A/102:109,
1/A/314:316,
1/A/337:339,
1/A/350:359		No text annotation
J5_9B24_0041/A/549:574,
1/A/626:634,
1/A/734:749,
1/A/790:801,
1/A/861:863		No text annotation
J5_9B24_0051/A/549:574,
1/A/626:635,
1/A/731:749,
1/A/790:801,
1/A/861:863		No text annotation
J5_9B24_0061/Y/44:51,
1/Y/113:118,
1/Y/127:128,
1/Y/147:149,
1/Y/175:177		No text annotation
homologous
J5_5J7L_013
NA
J5_9B24_0071/Y/618:620,
1/Y/652:656,
1/Y/669:671,
1/Y/1376:1377,
1/Y/2241:2242		No text annotation
homologous
J5_5J7L_014
NA
J5_9B24_0081/Y/676:681,
1/Y/783:786,
1/Y/924:927,
1/Y/1310:1311,
1/Y/1365:1371		No text annotation
homologous
J5_7A0S_004
J5_74302.6
J5_9B24_0091/Y/694:698,
1/Y/717:722,
1/Y/729:732,
1/Y/744:749,
1/Y/766:771		No text annotation
J5_9B24_0101/Y/1425:1429,
1/Y/1453:1465,
1/Y/1496:1500,
1/Y/1517:1521,
1/Y/1815:1822		No text annotation
J5_9B24_0111/Y/1884:1900,
1/Y/1924:1925,
1/Y/1968:1969,
1/Y/1973:1981,
1/Y/2212:2218		No text annotation
J5_9B24_0121/Y/2281:2288,
1/Y/2670:2677,
1/Y/2724:2731,
1/Y/2806:2812,
1/Y/2830:2835		No text annotation
J5_9B24_0131/Y/2297:2300,
1/Y/2467:2470,
1/Y/2482:2483,
1/Y/2505:2506,
1/Y/2651:2659		No text annotation
homologous
J5_4WF9_007
J5_39529.2
J6_9B24_0011/Y/40:43,
1/Y/178:182,
1/Y/213:223,
1/Y/231:235,
1/Y/262:268,
1/Y/514:524		No text annotation
J7_9B24_0011/Y/932:937,
1/Y/950:953,
1/Y/1057:1063,
1/Y/1089:1094,
1/Y/1105:1109,
1/Y/1282:1283,
1/Y/1300:1305		No text annotation

Problematic loops

#loop idProblemSequence
J3_9B24_003No text annotation
J3_9B24_004No text annotation
J3_9B24_005No text annotation
J3_9B24_006No text annotation
J3_9B24_007No text annotation
J3_9B24_008No text annotation
J3_9B24_010No text annotation
J3_9B24_011No text annotation
J3_9B24_021No text annotation
J3_9B24_023Kink-turn 3-way junction
J3_9B24_024No text annotation
J3_9B24_025No text annotation
J3_9B24_026No text annotation
J4_9B24_002No text annotation
J4_9B24_012No text annotation
J5_9B24_001No text annotation

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