HL_9B24_046

3D structure

PDB id

9B24 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT strain gidB mutant mycobacterial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

CGUAG

Length

5 nucleotides

Bulged bases

9B24|1|Y|U|403, 9B24|1|Y|A|404

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B24_046 not in the Motif Atlas

Homologous match to HL_5J7L_143

Geometric discrepancy: 0.2124

The information below is about HL_5J7L_143

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

9B24|1|Y|C|401
9B24|1|Y|G|402
9B24|1|Y|U|403
9B24|1|Y|A|404
9B24|1|Y|G|405

Current chains

Chain Y

23S rRNA

Nearby chains

Chain b

Large ribosomal subunit protein uL4

Chain q

Large ribosomal subunit protein uL24