HL_9B24_049

3D structure

PDB id

9B24 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT strain gidB mutant mycobacterial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

9B24|1|Y|U|552

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B24_049 not in the Motif Atlas

Homologous match to HL_4WF9_015

Geometric discrepancy: 0.5291

The information below is about HL_4WF9_015

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

9B24|1|Y|C|550
9B24|1|Y|G|551
9B24|1|Y|U|552
9B24|1|Y|G|553
9B24|1|Y|A|554
9B24|1|Y|G|555

Current chains

Chain Y

23S rRNA

Nearby chains

Chain b

Large ribosomal subunit protein uL4

Chain z

Large ribosomal subunit protein bL34