HL_9B24_053

3D structure

PDB id

9B24 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT strain gidB mutant mycobacterial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

CGGGUG

Length

6 nucleotides

Bulged bases

9B24|1|Y|G|707, 9B24|1|Y|G|708, 9B24|1|Y|U|709

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B24_053 not in the Motif Atlas

Geometric match to HL_7KI3_001

Geometric discrepancy: 0.3528

The information below is about HL_7KI3_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.8

Basepair signature

cWW-F

Number of instances in this motif group

23

Unit IDs

9B24|1|Y|C|705
9B24|1|Y|G|706
9B24|1|Y|G|707
9B24|1|Y|G|708
9B24|1|Y|U|709
9B24|1|Y|G|710

Current chains

Chain Y

23S rRNA

Nearby chains

Chain b

Large ribosomal subunit protein uL4