HL_9B24_054

3D structure

PDB id

9B24 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT strain gidB mutant mycobacterial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B24_054 not in the Motif Atlas

Homologous match to HL_4WF9_020

Geometric discrepancy: 0.1623

The information below is about HL_4WF9_020

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

9B24|1|Y|C|723
9B24|1|Y|G|724
9B24|1|Y|A|725
9B24|1|Y|A|726
9B24|1|Y|A|727
9B24|1|Y|G|728

Current chains

Chain Y

23S rRNA

Nearby chains

Chain 1

Large ribosomal subunit protein bL35

Chain h

Large ribosomal subunit protein uL15