HL_9B24_067

3D structure

PDB id

9B24 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT strain gidB mutant mycobacterial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

GUGAGAACC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B24_067 not in the Motif Atlas

Homologous match to HL_4WF9_032

Geometric discrepancy: 0.1886

The information below is about HL_4WF9_032

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.3

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

9B24|1|Y|G|1396
9B24|1|Y|U|1397
9B24|1|Y|G|1398
9B24|1|Y|A|1399
9B24|1|Y|G|1400
9B24|1|Y|A|1401
9B24|1|Y|A|1402
9B24|1|Y|C|1403
9B24|1|Y|C|1404

Current chains

Chain Y

23S rRNA

Nearby chains

Chain j

Large ribosomal subunit protein bL17

Chain o

Large ribosomal subunit protein uL22

Chain x

Large ribosomal subunit protein bL32