HL_9B24_068

3D structure

PDB id

9B24 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT strain gidB mutant mycobacterial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

GCCAGUC

Length

7 nucleotides

Bulged bases

9B24|1|Y|C|1440, 9B24|1|Y|U|1444

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B24_068 not in the Motif Atlas

Homologous match to HL_5J7L_166

Geometric discrepancy: 0.2001

The information below is about HL_5J7L_166

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

9B24|1|Y|G|1439
9B24|1|Y|C|1440
9B24|1|Y|C|1441
9B24|1|Y|A|1442
9B24|1|Y|G|1443
9B24|1|Y|U|1444
9B24|1|Y|C|1445

Current chains

Chain Y

23S rRNA

Nearby chains

Chain j

Large ribosomal subunit protein bL17

Chain o

Large ribosomal subunit protein uL22