HL_9B24_082

3D structure

PDB id

9B24 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT strain gidB mutant mycobacterial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

9B24|1|Y|C|2025

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B24_082 not in the Motif Atlas

Homologous match to HL_4WF9_044

Geometric discrepancy: 0.2128

The information below is about HL_4WF9_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9B24|1|Y|C|2023
9B24|1|Y|G|2024
9B24|1|Y|C|2025
9B24|1|Y|A|2026
9B24|1|Y|A|2027
9B24|1|Y|G|2028

Current chains

Chain Y

23S rRNA

Nearby chains

Chain Z

Large ribosomal subunit protein uL2

Chain t

Large ribosomal subunit protein bL28