HL_9B24_091

3D structure

PDB id

9B24 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT strain gidB mutant mycobacterial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

UGUAAGUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B24_091 not in the Motif Atlas

Homologous match to HL_9DFE_054

Geometric discrepancy: 0.3119

The information below is about HL_9DFE_054

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_52651.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

29

Unit IDs

9B24|1|Y|U|2548
9B24|1|Y|G|2549
9B24|1|Y|U|2550
9B24|1|Y|A|2551
9B24|1|Y|A|2552
9B24|1|Y|G|2553
9B24|1|Y|U|2554
9B24|1|Y|G|2555

Current chains

Chain Y

23S rRNA

Nearby chains

Chain c

Large ribosomal subunit protein uL5

Chain i

Large ribosomal subunit protein uL16

Chain s

Large ribosomal subunit protein bL27