HL_9B24_104

3D structure

PDB id

9B24 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT strain gidB mutant mycobacterial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

AGUAAU

Length

6 nucleotides

Bulged bases

9B24|1|Y|A|3081

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B24_104 not in the Motif Atlas

Homologous match to HL_4WF9_065

Geometric discrepancy: 0.3199

The information below is about HL_4WF9_065

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

9B24|1|Y|A|3077
9B24|1|Y|G|3078
9B24|1|Y|U|3079
9B24|1|Y|A|3080
9B24|1|Y|A|3081
9B24|1|Y|U|3082

Current chains

Chain Y

23S rRNA

Nearby chains