HL_9B4Z_050

3D structure

PDB id

9B4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (N1-methylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

9B4Z|1|BA|G|329, 9B4Z|1|BA|A|330, 9B4Z|1|BA|C|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B4Z_050 not in the Motif Atlas

Geometric match to HL_9E6Q_012

Geometric discrepancy: 0.0698

The information below is about HL_9E6Q_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27670.4

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

16

Unit IDs

9B4Z|1|BA|G|327
9B4Z|1|BA|U|328
9B4Z|1|BA|G|329
9B4Z|1|BA|A|330
9B4Z|1|BA|C|331
9B4Z|1|BA|A|332
9B4Z|1|BA|G|333
9B4Z|1|BA|C|334
9B4Z|1|BA|C|335

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BE

50S ribosomal protein L4

Chain BU

50S ribosomal protein L24