HL_9B4Z_092

3D structure

PDB id

9B4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (N1-methylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

9B4Z|1|BA|A|2268, 9B4Z|1|BA|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B4Z_092 not in the Motif Atlas

Geometric match to HL_8B0X_081

Geometric discrepancy: 0.0498

The information below is about HL_8B0X_081

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.1

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

12

Unit IDs

9B4Z|1|BA|C|2264
9B4Z|1|BA|U|2265
9B4Z|1|BA|A|2266
9B4Z|1|BA|A|2267
9B4Z|1|BA|A|2268
9B4Z|1|BA|G|2269
9B4Z|1|BA|A|2270
9B4Z|1|BA|G|2271
9B4Z|1|BA|U|2272
9B4Z|1|BA|A|2273
9B4Z|1|BA|A|2274
9B4Z|1|BA|C|2275
9B4Z|1|BA|G|2276

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BM

50S ribosomal protein L16

Chain BW

50S ribosomal protein L27