3D structure

PDB id
9B50 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome complex (unmethylated 16S A1408 + arbekacin)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
CUUCGG
Length
6 nucleotides
Bulged bases
9B50|1|AA|U|209, 9B50|1|AA|C|210
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9B50_005 not in the Motif Atlas
Geometric match to HL_7D81_001
Geometric discrepancy: 0.3211
The information below is about HL_7D81_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_50006.4
Basepair signature
cWW-F-F
Number of instances in this motif group
5

Unit IDs

9B50|1|AA|C|207
9B50|1|AA|U|208
9B50|1|AA|U|209
9B50|1|AA|C|210
9B50|1|AA|G|211
9B50|1|AA|G|212

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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