Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_9B50_0011/AA/12:22No text annotation
geometric
HL_8CRE_191
HL_31940.1
HL_9B50_0031/AA/158:163GNRA
geometric
HL_9DID_002
HL_34789.1
HL_9B50_0041/AA/186:191GNRA
geometric
HL_4Y1M_003
HL_34789.1
HL_9B50_0051/AA/207:212No text annotation
geometric
HL_7D81_001
HL_50006.4
HL_9B50_0061/AA/259:267No text annotation
geometric
HL_8B0X_005
HL_36455.1
HL_9B50_0071/AA/296:301No text annotation
geometric
HL_8B0X_006
HL_34789.1
HL_9B50_0081/AA/320:333No text annotation
geometric
HL_8B0X_007
HL_39665.1
HL_9B50_0091/AA/342:347UNCG
geometric
HL_8ID2_001
HL_61337.1
HL_9B50_0101/AA/379:384No text annotation
geometric
HL_8GLP_118
HL_34789.1
HL_9B50_0121/AA/462:470tRNA anticodon loop
geometric
HL_5UD5_002
HL_68642.1
HL_9B50_0131/AA/522:527GNRA variation
geometric
HL_4LFB_033
HL_34789.1
HL_9B50_0141/AA/617:623GNRA-like with tWH
geometric
HL_4LFB_014
HL_92337.1
HL_9B50_0151/AA/689:698No text annotation
geometric
HL_8B0X_014
HL_38491.1
HL_9B50_0161/AA/726:731No text annotation
geometric
HL_8B0X_015
HL_34789.1
HL_9B50_0171/AA/786:796No text annotation
geometric
HL_8B0X_016
HL_38491.1
HL_9B50_0181/AA/840:846No text annotation
HL_9B50_0191/AA/862:867No text annotation
geometric
HL_8B0X_017
HL_34789.1
HL_9B50_0201/AA/897:902GNRA
geometric
HL_8P9A_214
HL_34789.1
HL_9B50_0211/AA/963:972No text annotation
geometric
HL_4LFB_021
HL_97521.1
HL_9B50_0221/AA/1012:1017No text annotation
geometric
HL_8B0X_020
HL_34789.1
HL_9B50_0241/AA/1076:1081No text annotation
geometric
HL_8B0X_021
HL_34789.1
HL_9B50_0251/AA/1089:1096No text annotation
geometric
HL_8B0X_022
HL_63894.1
HL_9B50_0261/AA/1133:1141No text annotation
HL_9B50_0271/AA/1165:1171GNRA
geometric
HL_4W90_003
HL_34789.1
HL_9B50_0281/AA/1265:1270No text annotation
geometric
HL_8B0X_025
HL_34789.1
HL_9B50_0291/AA/1314:1323No text annotation
geometric
HL_8B0X_026
HL_93658.1
HL_9B50_0301/AA/1356:1366No text annotation
geometric
HL_8B0X_027
HL_86432.1
HL_9B50_0311/AA/1449:1454UNCG
geometric
HL_5D5L_003
HL_61337.1
HL_9B50_0321/AA/1515:1520No text annotation
geometric
HL_8B0X_029
HL_34789.1
HL_9B50_0331/BA/59:68No text annotation
geometric
HL_8B0X_033
HL_35677.4
HL_9B50_0341/BA/87:95No text annotation
geometric
HL_8B0X_034
HL_00911.1
HL_9B50_0351/BA/123:128No text annotation
geometric
HL_8B0X_035
HL_82710.3
HL_9B50_0361/BA/137:142No text annotation
HL_9B50_0371/BA/158:168No text annotation
geometric
HL_8B0X_037
HL_50765.1
HL_9B50_0381/BA/194:201No text annotation
geometric
HL_8B0X_038
HL_48677.1
HL_9B50_0391/BA/225:230No text annotation
geometric
HL_8B0X_039
HL_41169.1
HL_9B50_0401/BA/246:252No text annotation
geometric
HL_8B0X_040
HL_76371.1
HL_9B50_0411/BA/305:312No text annotation
geometric
HL_8B0X_041
HL_13999.1
HL_9B50_0421/BA/319:323No text annotation
geometric
HL_8B0X_042
HL_75660.6
HL_9B50_0431/BA/327:335No text annotation
geometric
HL_8B0X_043
HL_27670.3
HL_9B50_0441/BA/382:392No text annotation
geometric
HL_8B0X_044
HL_91503.8
HL_9B50_0451/BA/410:417No text annotation
geometric
HL_8B0X_045
HL_30680.4
HL_9B50_0461/BA/462:467No text annotation
geometric
HL_8B0X_046
HL_34789.1
HL_9B50_0471/BA/487:493No text annotation
geometric
HL_8B0X_047
HL_34789.1
HL_9B50_0481/BA/543:550No text annotation
HL_9B50_0491/BA/566:575No text annotation
geometric
HL_8B0X_048
HL_33597.1
HL_9B50_0501/BA/611:617No text annotation
geometric
HL_9E6Q_019
HL_41169.1
HL_9B50_0511/BA/629:634No text annotation
geometric
HL_8B0X_050
HL_34789.1
HL_9B50_0521/BA/641:647No text annotation
geometric
HL_8B0X_051
HL_92337.1
HL_9B50_0531/BA/712:719No text annotation
geometric
HL_8B0X_052
HL_98423.1
HL_9B50_0541/BA/744:753No text annotation
geometric
HL_7A0S_022
HL_50204.1
HL_9B50_0551/BA/779:785UNCG variation
geometric
HL_7A0S_023
HL_51020.1
HL_9B50_0561/BA/826:831No text annotation
geometric
HL_8B0X_055
HL_27530.1
HL_9B50_0571/BA/955:962GNRA
geometric
HL_4WF9_027
HL_34789.1
HL_9B50_0581/BA/978:985No text annotation
geometric
HL_4WF9_028
HL_47171.1
HL_9B50_0611/BA/1172:1177No text annotation
HL_9B50_0621/BA/1222:1227No text annotation
geometric
HL_8B0X_059
HL_34789.1
HL_9B50_0631/BA/1281:1289No text annotation
geometric
HL_8B0X_060
HL_33597.1
HL_9B50_0641/BA/1324:1330No text annotation
geometric
HL_8B0X_061
HL_49081.1
HL_9B50_0651/BA/1363:1368No text annotation
geometric
HL_8B0X_062
HL_34789.1
HL_9B50_0661/BA/1389:1398No text annotation
geometric
HL_8B0X_063
HL_77449.1
HL_9B50_0671/BA/1451:1459No text annotation
geometric
HL_8B0X_064
HL_00557.1
HL_9B50_0681/BA/1492:1498No text annotation
geometric
HL_8B0X_065
HL_49081.1
HL_9B50_0691/BA/1533:1538No text annotation
geometric
HL_8B0X_066
HL_13184.1
HL_9B50_0701/BA/1565:1568No text annotation
geometric
HL_8B0X_067
HL_90436.1
HL_9B50_0711/BA/1612:1619No text annotation
geometric
HL_8B0X_068
HL_28592.1
HL_9B50_0721/BA/1630:1636No text annotation
geometric
HL_8B0X_069
HL_34789.1
HL_9B50_0731/BA/1691:1696No text annotation
geometric
HL_8B0X_070
HL_61337.1
HL_9B50_0741/BA/1728:1731No text annotation
HL_9B50_0751/BA/1752:1756No text annotation
geometric
HL_8B0X_072
HL_80709.4
HL_9B50_0761/BA/1777:1787No text annotation
geometric
HL_8B0X_073
HL_87681.1
HL_9B50_0771/BA/1806:1811No text annotation
geometric
HL_8B0X_074
HL_37569.1
HL_9B50_0781/BA/1868:1873No text annotation
geometric
HL_5HR7_005
HL_50006.4
HL_9B50_0791/BA/1910:1920No text annotation
geometric
HL_9DFE_046
HL_82185.1
HL_9B50_0801/BA/1949:1957No text annotation
geometric
HL_8B0X_077
HL_61418.1
HL_9B50_0811/BA/2027:2036No text annotation
geometric
HL_8B0X_078
HL_78372.1
HL_9B50_0831/BA/2209:2215No text annotation
geometric
HL_8B0X_079
HL_81964.1
HL_9B50_0841/BA/2248:2256No text annotation
geometric
HL_8B0X_080
HL_11974.1
HL_9B50_0851/BA/2264:2276No text annotation
geometric
HL_8B0X_081
HL_02042.1
HL_9B50_0861/BA/2304:2312No text annotation
geometric
HL_9E6Q_072
HL_02452.1
HL_9B50_0871/BA/2324:2331No text annotation
geometric
HL_8B0X_083
HL_52651.1
HL_9B50_0881/BA/2356:2361No text annotation
geometric
HL_8B0X_084
HL_34789.1
HL_9B50_0891/BA/2374:2379No text annotation
geometric
HL_8B0X_085
HL_34789.1
HL_9B50_0901/BA/2404:2413No text annotation
geometric
HL_8B0X_086
HL_51853.1
HL_9B50_0911/BA/2471:2479No text annotation
geometric
HL_8B0X_087
HL_52011.1
HL_9B50_0921/BA/2528:2535No text annotation
geometric
HL_8B0X_088
HL_46665.1
HL_9B50_0931/BA/2551:2557No text annotation
geometric
HL_8B0X_089
HL_48677.1
HL_9B50_0941/BA/2594:2599No text annotation
geometric
HL_8B0X_090
HL_34789.1
HL_9B50_0951/BA/2658:2663No text annotation
geometric
HL_9E6Q_062
HL_34789.1
HL_9B50_0961/BA/2701:2706No text annotation
geometric
HL_8B0X_092
HL_12125.1
HL_9B50_0971/BA/2745:2759No text annotation
geometric
HL_8B0X_093
HL_53269.1
HL_9B50_0981/BA/2796:2799Mini UNCG
geometric
HL_8P9A_196
HL_90436.1
HL_9B50_0991/BA/2819:2827No text annotation
geometric
HL_8B0X_095
HL_37889.1
HL_9B50_1001/BA/2856:2861No text annotation
geometric
HL_8B0X_096
HL_34789.1
HL_9B50_1011/BB/34:48No text annotation
geometric
HL_8B0X_102
HL_97756.3
HL_9B50_1021/BB/38:44No text annotation
geometric
HL_8B0X_097
HL_59381.1
HL_9B50_1031/BB/86:90No text annotation
geometric
HL_8B0X_098
HL_90436.1

Problematic loops

#loop idProblemSequence
HL_9B50_002No text annotation
HL_9B50_011UNCG
HL_9B50_023No text annotation
HL_9B50_059No text annotation
HL_9B50_060No text annotation
HL_9B50_082No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_9B50_0011/AA/30:32,
1/AA/552:553
No text annotation
geometric
IL_8B0X_001
IL_28408.1
IL_9B50_0021/AA/44:45,
1/AA/396:398
No text annotation
geometric
IL_8B0X_002
IL_14190.1
IL_9B50_0031/AA/47:52,
1/AA/359:361
No text annotation
geometric
IL_8B0X_003
IL_68149.1
IL_9B50_0041/AA/54:56,
1/AA/356:357
No text annotation
geometric
IL_8B0X_004
IL_34520.1
IL_9B50_0051/AA/63:66,
1/AA/103:104
No text annotation
geometric
IL_8B0X_005
IL_71421.1
IL_9B50_0061/AA/67:69,
1/AA/99:102
No text annotation
geometric
IL_8B0X_006
IL_82096.1
IL_9B50_0071/AA/70:73,
1/AA/97:98
No text annotation
geometric
IL_8B0X_007
IL_87975.1
IL_9B50_0081/AA/75:76,
1/AA/93:95
No text annotation
geometric
IL_8B0X_008
IL_28408.1
IL_9B50_0091/AA/128:131,
1/AA/231:233
No text annotation
geometric
IL_8B0X_009
IL_30229.1
IL_9B50_0101/AA/132:136,
1/AA/227:230
No text annotation
geometric
IL_8B0X_010
IL_60988.1
IL_9B50_0111/AA/144:146,
1/AA/176:178
No text annotation
geometric
IL_8B0X_011
IL_10892.1
IL_9B50_0121/AA/147:153,
1/AA/168:175
No text annotation
geometric
IL_8B0X_012
IL_24485.1
IL_9B50_0131/AA/203:206,
1/AA/213:214
No text annotation
IL_9B50_0141/AA/242:247,
1/AA/277:284
No text annotation
geometric
IL_8B0X_013
IL_46174.4
IL_9B50_0151/AA/249:252,
1/AA/274:275
No text annotation
geometric
IL_8B0X_014
IL_22002.1
IL_9B50_0161/AA/292:293,
1/AA/304:308
C-loop
geometric
IL_4LFB_013
IL_06671.1
IL_9B50_0171/AA/367:369,
1/AA/392:393
No text annotation
geometric
IL_8B0X_016
IL_97561.1
IL_9B50_0181/AA/371:375,
1/AA/389:390
No text annotation
geometric
IL_8B0X_017
IL_26900.1
IL_9B50_0191/AA/375:376,
1/AA/387:389
No text annotation
geometric
IL_8B0X_018
IL_28408.1
IL_9B50_0211/AA/440:442,
1/AA/492:497
No text annotation
IL_9B50_0221/AA/446:450,
1/AA/483:488
No text annotation
IL_9B50_0231/AA/450:455,
1/AA/477:483
No text annotation
IL_9B50_0241/AA/504:511,
1/AA/540:541
SSU/LSU pseudoknot
geometric
IL_8P9A_402
IL_11411.1
IL_9B50_0251/AA/515:521,
1/AA/528:536
No text annotation
geometric
IL_8P9A_404
IL_52042.1
IL_9B50_0261/AA/569:575,
1/AA/880:881
No text annotation
geometric
IL_8B0X_025
IL_20847.1
IL_9B50_0271/AA/580:584,
1/AA/757:761
No text annotation
geometric
IL_8B0X_026
IL_05821.1
IL_9B50_0281/AA/594:596,
1/AA/644:645
No text annotation
geometric
IL_8B0X_027
IL_48076.7
IL_9B50_0291/AA/597:598,
1/AA/640:643
No text annotation
geometric
IL_8B0X_028
IL_73108.1
IL_9B50_0301/AA/605:612,
1/AA/628:633
No text annotation
geometric
IL_8B0X_029
IL_04211.1
IL_9B50_0311/AA/654:655,
1/AA/751:754
No text annotation
geometric
IL_8B0X_030
IL_74641.1
IL_9B50_0321/AA/658:659,
1/AA/746:748
Single stack bend
geometric
IL_4LFB_041
IL_15011.1
IL_9B50_0331/AA/662:666,
1/AA/740:743
No text annotation
geometric
IL_8B0X_032
IL_15225.1
IL_9B50_0341/AA/673:677,
1/AA/713:717
No text annotation
geometric
IL_8B0X_176
IL_71154.1
IL_9B50_0351/AA/684:688,
1/AA/699:706
No text annotation
geometric
IL_8B0X_034
IL_54465.1
IL_9B50_0361/AA/774:778,
1/AA/804:805
No text annotation
geometric
IL_8B0X_035
IL_29346.3
IL_9B50_0371/AA/779:783,
1/AA/799:803
No text annotation
geometric
IL_8B0X_036
IL_05821.1
IL_9B50_0381/AA/887:894,
1/AA/905:910
No text annotation
geometric
IL_8B0X_037
IL_84044.1
IL_9B50_0391/AA/922:923,
1/AA/1393:1395
No text annotation
geometric
IL_8B0X_038
IL_14190.1
IL_9B50_0401/AA/925:927,
1/AA/1390:1391
No text annotation
geometric
IL_8B0X_039
IL_28408.1
IL_9B50_0411/AA/933:935,
1/AA/1380:1384
Minor groove platform
geometric
IL_4LFB_037
IL_61370.1
IL_9B50_0421/AA/953:954,
1/AA/1226:1228
No text annotation
geometric
IL_8B0X_041
IL_34520.1
IL_9B50_0431/AA/993:997,
1/AA/1044:1045
No text annotation
geometric
IL_8B0X_042
IL_61370.1
IL_9B50_0441/AA/998:999,
1/AA/1041:1043
Single stack bend
geometric
IL_7A0S_054
IL_15011.1
IL_9B50_0451/AA/1048:1050,
1/AA/1208:1209
No text annotation
geometric
IL_8B0X_044
IL_97561.1
IL_9B50_0461/AA/1052:1056,
1/AA/1204:1206
No text annotation
geometric
IL_8B0X_046
IL_82453.1
IL_9B50_0471/AA/1057:1058,
1/AA/1199:1203
No text annotation
geometric
IL_8B0X_047
IL_24264.1
IL_9B50_0481/AA/1060:1061,
1/AA/1195:1197
No text annotation
geometric
IL_8B0X_048
IL_14190.1
IL_9B50_0491/AA/1061:1063,
1/AA/1193:1195
No text annotation
geometric
IL_8B0X_049
IL_68118.1
IL_9B50_0501/AA/1124:1128,
1/AA/1144:1149
No text annotation
geometric
IL_8B0X_050
IL_38603.1
IL_9B50_0511/AA/1129:1132,
1/AA/1142:1143
Minor groove platform
geometric
IL_3MXH_005
IL_87975.1
IL_9B50_0521/AA/1158:1161,
1/AA/1175:1181
No text annotation
geometric
IL_8B0X_052
IL_32376.1
IL_9B50_0531/AA/1247:1253,
1/AA/1284:1290
No text annotation
geometric
IL_8B0X_053
IL_12056.1
IL_9B50_0541/AA/1255:1258,
1/AA/1277:1282
No text annotation
geometric
IL_8B0X_054
IL_08849.1
IL_9B50_0551/AA/1259:1263,
1/AA/1272:1276
No text annotation
geometric
IL_8B0X_055
IL_87767.1
IL_9B50_0561/AA/1303:1308,
1/AA/1329:1334
No text annotation
geometric
IL_8B0X_056
IL_57885.1
IL_9B50_0571/AA/1399:1401,
1/AA/1501:1504
No text annotation
geometric
IL_8GLP_274
IL_18228.1
IL_9B50_0581/AA/1401:1404,
1/AA/1497:1501
No text annotation
geometric
IL_8B0X_058
IL_25873.1
IL_9B50_0591/AA/1405:1407,
1/AA/1494:1496
Isolated non-canonical cWW pair
geometric
IL_4LFB_069
IL_01003.1
IL_9B50_0601/AA/1407:1409,
1/AA/1491:1494
Decoding loop related
geometric
IL_2O3X_002
IL_29925.1
IL_9B50_0611/AA/1412:1414,
1/AA/1486:1488
No text annotation
geometric
IL_8B0X_060
IL_01003.1
IL_9B50_0621/AA/1416:1419,
1/AA/1481:1484
No text annotation
geometric
IL_8B0X_061
IL_58355.1
IL_9B50_0631/AA/1430:1435,
1/AA/1466:1470
No text annotation
geometric
IL_8B0X_062
IL_67427.1
IL_9B50_0641/AA/1440:1442,
1/AA/1460:1461
No text annotation
geometric
IL_8B0X_063
IL_34520.1
IL_9B50_0651/AA/1445:1448,
1/AA/1455:1457
No text annotation
geometric
IL_8B0X_064
IL_05502.1
IL_9B50_0661/BA/24:30,
1/BA/510:516
No text annotation
geometric
IL_8B0X_065
IL_22311.1
IL_9B50_0671/BA/36:37,
1/BA/442:444
No text annotation
geometric
IL_8B0X_066
IL_14190.1
IL_9B50_0681/BA/43:44,
1/BA/434:436
No text annotation
geometric
IL_8B0X_067
IL_34520.1
IL_9B50_0691/BA/81:85,
1/BA/97:105
No text annotation
IL_9B50_0701/BA/183:184,
1/BA/212:214
No text annotation
geometric
IL_8B0X_069
IL_15011.1
IL_9B50_0711/BA/188:194,
1/BA/201:208
No text annotation
geometric
IL_8B0X_070
IL_62167.1
IL_9B50_0721/BA/239:245,
1/BA/253:258
No text annotation
geometric
IL_8B0X_071
IL_02666.1
IL_9B50_0731/BA/269:271,
1/BA/366:370
No text annotation
IL_9B50_0741/BA/274:281,
1/BA/359:363
No text annotation
IL_9B50_0751/BA/293:295,
1/BA/343:347
No text annotation
geometric
IL_8B0X_074
IL_76658.1
IL_9B50_0761/BA/481:484,
1/BA/496:509
No text annotation
geometric
IL_8B0X_075
IL_44923.1
IL_9B50_0771/BA/536:539,
1/BA/554:557
No text annotation
geometric
IL_8B0X_076
IL_58355.1
IL_9B50_0781/BA/564:566,
1/BA/575:577
No text annotation
geometric
IL_8B0X_077
IL_71625.1
IL_9B50_0791/BA/606:610,
1/BA/618:622
No text annotation
geometric
IL_8B0X_078
IL_66798.3
IL_9B50_0801/BA/672:674,
1/BA/806:808
No text annotation
geometric
IL_8B0X_079
IL_01003.1
IL_9B50_0811/BA/674:678,
1/BA/799:806
No text annotation
geometric
IL_8B0X_080
IL_73855.1
IL_9B50_0821/BA/697:698,
1/BA/763:765
No text annotation
geometric
IL_8B0X_081
IL_14190.1
IL_9B50_0831/BA/702:703,
1/BA/728:730
No text annotation
geometric
IL_9E6Q_028
IL_28408.1
IL_9B50_0841/BA/703:707,
1/BA/724:728
No text annotation
geometric
IL_8B0X_083
IL_15190.1
IL_9B50_0851/BA/738:740,
1/BA/757:758
No text annotation
geometric
IL_8B0X_084
IL_48076.7
IL_9B50_0861/BA/775:777,
1/BA/787:791
No text annotation
geometric
IL_8B0X_085
IL_89509.1
IL_9B50_0871/BA/844:847,
1/BA/933:934
No text annotation
geometric
IL_8B0X_087
IL_79144.1
IL_9B50_0881/BA/844:848,
1/BA/930:934
No text annotation
IL_9B50_0891/BA/847:848,
1/BA/930:933
No text annotation
geometric
IL_8B0X_088
IL_36175.1
IL_9B50_0901/BA/850:851,
1/BA/926:928
No text annotation
geometric
IL_8B0X_089
IL_15011.1
IL_9B50_0911/BA/856:862,
1/BA/915:921
No text annotation
geometric
IL_8B0X_090
IL_94128.1
IL_9B50_0921/BA/862:863,
1/BA/913:915
No text annotation
geometric
IL_8B0X_091
IL_28408.1
IL_9B50_0931/BA/864:868,
1/BA/909:912
No text annotation
geometric
IL_8B0X_092
IL_16301.1
IL_9B50_0941/BA/870:872,
1/BA/905:907
No text annotation
geometric
IL_8B0X_093
IL_01003.1
IL_9B50_0951/BA/875:879,
1/BA/898:902
Double sheared with non-canonical cWW
geometric
IL_4V9F_085
IL_87767.1
IL_9B50_0961/BA/880:881,
1/BA/895:897
No text annotation
IL_9B50_0971/BA/994:996,
1/BA/1159:1160
No text annotation
geometric
IL_8B0X_096
IL_05642.1
IL_9B50_0981/BA/998:1002,
1/BA/1153:1157
No text annotation
geometric
IL_8B0X_097
IL_08938.1
IL_9B50_0991/BA/1004:1011,
1/BA/1150:1151
No text annotation
geometric
IL_8B0X_098
IL_11411.1
IL_9B50_1001/BA/1011:1013,
1/BA/1149:1150
No text annotation
geometric
IL_8B0X_099
IL_97561.1
IL_9B50_1011/BA/1018:1024,
1/BA/1140:1144
Kink-turn related
geometric
IL_4WF9_039
IL_57188.6
IL_9B50_1021/BA/1024:1030,
1/BA/1124:1140
No text annotation
geometric
IL_8B0X_101
IL_50715.4
IL_9B50_1031/BA/1031:1034,
1/BA/1121:1123
No text annotation
geometric
IL_8B0X_102
IL_30229.1
IL_9B50_1041/BA/1038:1041,
1/BA/1114:1117
No text annotation
geometric
IL_8B0X_103
IL_15225.1
IL_9B50_1051/BA/1043:1051,
1/BA/1108:1112
No text annotation
geometric
IL_8B0X_104
IL_99692.3
IL_9B50_1071/BA/1196:1198,
1/BA/1247:1250
No text annotation
geometric
IL_8B0X_105
IL_42997.4
IL_9B50_1081/BA/1202:1206,
1/BA/1240:1243
No text annotation
IL_9B50_1091/BA/1208:1215,
1/BA/1234:1238
No text annotation
geometric
IL_8B0X_107
IL_90775.1
IL_9B50_1101/BA/1262:1269,
1/BA/2011:2017
No text annotation
geometric
IL_8B0X_108
IL_62167.1
IL_9B50_1111/BA/1310:1313,
1/BA/1603:1604
Major groove platform; stack outside cWW
geometric
IL_4WF9_049
IL_74641.1
IL_9B50_1121/BA/1319:1323,
1/BA/1331:1333
No text annotation
geometric
IL_8B0X_110
IL_63596.12
IL_9B50_1131/BA/1351:1355,
1/BA/1376:1380
No text annotation
geometric
IL_8B0X_111
IL_89021.3
IL_9B50_1141/BA/1357:1361,
1/BA/1370:1374
No text annotation
geometric
IL_8B0X_112
IL_05821.1
IL_9B50_1151/BA/1415:1416,
1/BA/1582:1587
No text annotation
IL_9B50_1161/BA/1417:1421,
1/BA/1577:1581
No text annotation
geometric
IL_8B0X_114
IL_08938.1
IL_9B50_1171/BA/1432:1435,
1/BA/1557:1561
No text annotation
geometric
IL_8B0X_115
IL_15225.1
IL_9B50_1181/BA/1437:1440,
1/BA/1551:1555
No text annotation
geometric
IL_8B0X_116
IL_74317.1
IL_9B50_1191/BA/1450:1451,
1/BA/1459:1461
No text annotation
geometric
IL_8B0X_117
IL_97561.1
IL_9B50_1201/BA/1468:1471,
1/BA/1520:1524
No text annotation
geometric
IL_8B0X_118
IL_68574.5
IL_9B50_1211/BA/1474:1478,
1/BA/1513:1517
No text annotation
geometric
IL_8B0X_119
IL_38862.5
IL_9B50_1221/BA/1481:1482,
1/BA/1507:1510
No text annotation
geometric
IL_8B0X_120
IL_52564.1
IL_9B50_1231/BA/1489:1491,
1/BA/1499:1500
No text annotation
geometric
IL_8B0X_121
IL_14190.1
IL_9B50_1241/BA/1526:1529,
1/BA/1542:1546
No text annotation
geometric
IL_8B0X_122
IL_45790.1
IL_9B50_1251/BA/1651:1656,
1/BA/2004:2006
No text annotation
geometric
IL_8B0X_123
IL_12566.5
IL_9B50_1261/BA/1663:1665,
1/BA/1995:1997
No text annotation
geometric
IL_8B0X_124
IL_10432.1
IL_9B50_1271/BA/1666:1669,
1/BA/1993:1994
No text annotation
geometric
IL_9E6Q_063
IL_74641.1
IL_9B50_1281/BA/1666:1674,
1/BA/1990:1994
No text annotation
geometric
IL_8B0X_180
IL_80252.1
IL_9B50_1291/BA/1669:1674,
1/BA/1990:1993
No text annotation
geometric
IL_8B0X_126
IL_28217.1
IL_9B50_1301/BA/1686:1691,
1/BA/1696:1702
No text annotation
geometric
IL_8B0X_127
IL_20700.1
IL_9B50_1311/BA/1712:1718,
1/BA/1742:1746
No text annotation
geometric
IL_8B0X_128
IL_82100.1
IL_9B50_1321/BA/1720:1724,
1/BA/1736:1740
No text annotation
geometric
IL_8B0X_129
IL_70744.1
IL_9B50_1331/BA/1727:1728,
1/BA/1731:1733
No text annotation
geometric
IL_8B0X_130
IL_05642.1
IL_9B50_1341/BA/1770:1771,
1/BA/1980:1982
No text annotation
geometric
IL_8B0X_131
IL_14190.1
IL_9B50_1351/BA/1798:1804,
1/BA/1813:1821
No text annotation
geometric
IL_8B0X_132
IL_17069.6
IL_9B50_1361/BA/1837:1840,
1/BA/1902:1903
No text annotation
geometric
IL_8B0X_133
IL_73108.1
IL_9B50_1371/BA/1841:1842,
1/BA/1898:1901
No text annotation
geometric
IL_8B0X_134
IL_71421.1
IL_9B50_1381/BA/1846:1849,
1/BA/1893:1894
No text annotation
geometric
IL_8B0X_135
IL_73108.1
IL_9B50_1391/BA/1851:1860,
1/BA/1882:1891
No text annotation
IL_9B50_1401/BA/1864:1867,
1/BA/1874:1878
No text annotation
geometric
IL_8B0X_136
IL_77691.6
IL_9B50_1411/BA/1933:1934,
1/BA/1964:1967
No text annotation
geometric
IL_8B0X_137
IL_24886.1
IL_9B50_1421/BA/1934:1945,
1/BA/1961:1964
No text annotation
geometric
IL_7A0S_072
IL_04332.3
IL_9B50_1431/BA/2050:2052,
1/BA/2617:2618
No text annotation
geometric
IL_8B0X_139
IL_48076.7
IL_9B50_1441/BA/2054:2056,
1/BA/2612:2615
No text annotation
geometric
IL_8B0X_140
IL_80025.1
IL_9B50_1451/BA/2067:2069,
1/BA/2442:2443
No text annotation
geometric
IL_8B0X_182
IL_97561.1
IL_9B50_1461/BA/2070:2071,
1/BA/2438:2441
No text annotation
geometric
IL_8B0X_143
IL_34520.1
IL_9B50_1471/BA/2081:2083,
1/BA/2236:2239
No text annotation
geometric
IL_8B0X_144
IL_87316.1
IL_9B50_1481/BA/2085:2087,
1/BA/2232:2234
No text annotation
geometric
IL_8B0X_145
IL_71625.1
IL_9B50_1551/BA/2202:2204,
1/BA/2220:2221
No text annotation
geometric
IL_8B0X_146
IL_97561.1
IL_9B50_1561/BA/2350:2353,
1/BA/2364:2367
No text annotation
geometric
IL_8B0X_148
IL_58355.1
IL_9B50_1571/BA/2401:2403,
1/BA/2414:2415
No text annotation
geometric
IL_9AXU_122
IL_97561.1
IL_9B50_1581/BA/2453:2454,
1/BA/2498:2500
No text annotation
geometric
IL_8B0X_183
IL_15011.1
IL_9B50_1591/BA/2454:2455,
1/BA/2496:2498
No text annotation
geometric
IL_8B0X_184
IL_48076.7
IL_9B50_1601/BA/2457:2459,
1/BA/2493:2494
Major groove platform
geometric
IL_7A0S_085
IL_48076.7
IL_9B50_1611/BA/2459:2461,
1/BA/2489:2493
No text annotation
geometric
IL_8B0X_152
IL_36931.1
IL_9B50_1621/BA/2466:2470,
1/BA/2480:2484
No text annotation
geometric
IL_8B0X_153
IL_87767.1
IL_9B50_1631/BA/2507:2508,
1/BA/2580:2582
Major groove platform
geometric
IL_7A0S_088
IL_46637.1
IL_9B50_1641/BA/2510:2512,
1/BA/2574:2578
No text annotation
geometric
IL_8B0X_155
IL_68118.1
IL_9B50_1651/BA/2512:2513,
1/BA/2571:2574
No text annotation
geometric
IL_8B0X_156
IL_44609.1
IL_9B50_1661/BA/2522:2523,
1/BA/2540:2543
No text annotation
geometric
IL_8B0X_157
IL_94991.1
IL_9B50_1671/BA/2591:2592,
1/BA/2601:2603
No text annotation
geometric
IL_8GLP_154
IL_14190.1
IL_9B50_1681/BA/2636:2640,
1/BA/2774:2782
No text annotation
geometric
IL_8B0X_160
IL_04638.4
IL_9B50_1691/BA/2652:2658,
1/BA/2663:2668
No text annotation
geometric
IL_8B0X_161
IL_16458.5
IL_9B50_1701/BA/2680:2684,
1/BA/2725:2727
No text annotation
geometric
IL_8B0X_162
IL_63596.12
IL_9B50_1711/BA/2687:2691,
1/BA/2718:2722
No text annotation
geometric
IL_8B0X_163
IL_82016.1
IL_9B50_1721/BA/2695:2696,
1/BA/2711:2714
No text annotation
geometric
IL_8B0X_164
IL_44609.1
IL_9B50_1731/BA/2737:2742,
1/BA/2762:2767
No text annotation
geometric
IL_8B0X_165
IL_91079.1
IL_9B50_1741/BA/2795:2796,
1/BA/2799:2801
No text annotation
geometric
IL_8GLP_057
IL_14190.1
IL_9B50_1751/BA/2806:2811,
1/BA/2889:2892
No text annotation
IL_9B50_1761/BA/2838:2839,
1/BA/2878:2880
No text annotation
geometric
IL_8B0X_168
IL_78536.1
IL_9B50_1771/BA/2843:2846,
1/BA/2870:2874
No text annotation
geometric
IL_8B0X_169
IL_60988.1
IL_9B50_1781/BA/2847:2852,
1/BA/2865:2869
No text annotation
geometric
IL_8B0X_170
IL_48489.1
IL_9B50_1791/BB/17:18,
1/BB/65:67
Major groove intercalation
geometric
IL_9DFE_110
IL_14190.1
IL_9B50_1801/BB/23:28,
1/BB/56:60
No text annotation
geometric
IL_8B0X_172
IL_18472.5
IL_9B50_1811/BB/30:31,
1/BB/51:54
No text annotation
geometric
IL_8QYX_167
IL_73108.1
IL_9B50_1821/BB/34:38,
1/BB/44:48
No text annotation
geometric
IL_8B0X_174
IL_58103.12
IL_9B50_1831/BB/71:79,
1/BB/97:105
No text annotation
geometric
IL_8B0X_175
IL_71138.1

Problematic loops

#loop idProblemSequence
IL_9B50_020No text annotation
IL_9B50_106No text annotation
IL_9B50_149No text annotation
IL_9B50_150No text annotation
IL_9B50_151No text annotation
IL_9B50_152No text annotation
IL_9B50_153No text annotation
IL_9B50_154No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_9B50_0011/AA/46:47,
1/AA/361:367,
1/AA/393:395
No text annotation
geometric
J3_8B0X_001
J3_58657.1
J3_9B50_0021/AA/46:52,
1/AA/359:367,
1/AA/393:395
No text annotation
geometric
J3_8B0X_027
J3_63856.1
J3_9B50_0031/AA/586:588,
1/AA/651:654,
1/AA/754:755
No text annotation
geometric
J3_8B0X_002
J3_01633.1
J3_9B50_0041/AA/586:588,
1/AA/651:655,
1/AA/751:755
No text annotation
geometric
J3_8B0X_028
J3_17385.5
J3_9B50_0051/AA/672:673,
1/AA/717:725,
1/AA/732:734
No text annotation
geometric
J3_8B0X_003
J3_74074.1
J3_9B50_0061/AA/826:829,
1/AA/857:861,
1/AA/868:874
No text annotation
geometric
J3_8B0X_004
J3_02285.1
J3_9B50_0071/AA/936:939,
1/AA/1344:1350,
1/AA/1372:1379
No text annotation
geometric
J3_8B0X_005
J3_85722.1
J3_9B50_0081/AA/943:946,
1/AA/1235:1237,
1/AA/1337:1340
No text annotation
geometric
J3_4LFB_003
J3_44359.1
J3_9B50_0091/AA/955:962,
1/AA/973:984,
1/AA/1221:1225
No text annotation
geometric
J3_8B0X_007
J3_88451.1
J3_9B50_0101/AA/990:993,
1/AA/1045:1047,
1/AA/1210:1215
No text annotation
geometric
J3_8B0X_008
J3_84394.1
J3_9B50_0111/AA/990:997,
1/AA/1044:1047,
1/AA/1210:1215
No text annotation
geometric
J3_8B0X_029
J3_28881.1
J3_9B50_0121/AA/1003:1006,
1/AA/1023:1027,
1/AA/1034:1037
No text annotation
J3_9B50_0131/AA/1063:1068,
1/AA/1107:1113,
1/AA/1187:1193
No text annotation
geometric
J3_8B0X_010
J3_01343.1
J3_9B50_0141/AA/1073:1074,
1/AA/1083:1086,
1/AA/1099:1102
No text annotation
geometric
J3_8B0X_030
J3_11018.1
J3_9B50_0151/AA/1116:1118,
1/AA/1155:1158,
1/AA/1181:1184
No text annotation
geometric
J3_8B0X_012
J3_82365.5
J3_9B50_0161/AA/1116:1118,
1/AA/1155:1161,
1/AA/1175:1184
No text annotation
geometric
J3_8B0X_031
J3_40706.1
J3_9B50_0171/AA/1237:1241,
1/AA/1296:1303,
1/AA/1334:1337
No text annotation
geometric
J3_8B0X_013
J3_03192.1
J3_9B50_0181/BA/30:31,
1/BA/474:481,
1/BA/509:510
No text annotation
geometric
J3_8B0X_014
J3_68715.1
J3_9B50_0191/BA/30:31,
1/BA/474:484,
1/BA/496:510
No text annotation
geometric
J3_8B0X_032
J3_17917.1
J3_9B50_0201/BA/32:35,
1/BA/445:461,
1/BA/468:473
No text annotation
geometric
J3_8B0X_033
J3_07616.1
J3_9B50_0211/BA/56:57,
1/BA/70:76,
1/BA/110:114
No text annotation
geometric
J3_8B0X_015
J3_01004.1
J3_9B50_0221/BA/297:301,
1/BA/316:325,
1/BA/337:341
No text annotation
geometric
J3_8B0X_034
J3_77124.1
J3_9B50_0231/BA/683:689,
1/BA/773:775,
1/BA/791:794
No text annotation
geometric
J3_8B0X_016
J3_46658.1
J3_9B50_0241/BA/698:700,
1/BA/732:736,
1/BA/760:763
No text annotation
geometric
J3_8B0X_017
J3_69816.1
J3_9B50_0271/BA/1298:1303,
1/BA/1625:1627,
1/BA/1639:1642
No text annotation
geometric
J3_8B0X_018
J3_32852.7
J3_9B50_0281/BA/1306:1309,
1/BA/1605:1611,
1/BA/1620:1622
No text annotation
geometric
J3_8B0X_019
J3_47341.1
J3_9B50_0291/BA/1344:1349,
1/BA/1382:1385,
1/BA/1402:1403
No text annotation
J3_9B50_0301/BA/1424:1429,
1/BA/1564:1565,
1/BA/1568:1574
No text annotation
geometric
J3_8B0X_035
J3_34864.3
J3_9B50_0311/BA/2091:2093,
1/BA/2196:2200,
1/BA/2223:2228
No text annotation
geometric
J3_8B0X_021
J3_17460.1
J3_9B50_0321/BA/2282:2284,
1/BA/2384:2395,
1/BA/2421:2427
No text annotation
geometric
J3_8B0X_036
J3_04772.1
J3_9B50_0331/BA/2295:2299,
1/BA/2317:2323,
1/BA/2332:2337
No text annotation
J3_9B50_0341/BA/2517:2520,
1/BA/2545:2547,
1/BA/2561:2567
No text annotation
geometric
J3_8B0X_023
J3_32601.6
J3_9B50_0351/BA/2789:2791,
1/BA/2805:2806,
1/BA/2892:2894
No text annotation
J3_9B50_0361/BA/2812:2815,
1/BA/2831:2836,
1/BA/2882:2888
No text annotation
J3_9B50_0371/BB/10:16,
1/BB/68:70,
1/BB/106:110
No text annotation
J4_9B50_0011/AA/115:122,
1/AA/239:240,
1/AA/286:289,
1/AA/311:312
No text annotation
J4_9B50_0021/AA/142:144,
1/AA/178:184,
1/AA/193:198,
1/AA/219:221
No text annotation
J4_9B50_0031/AA/575:577,
1/AA/764:769,
1/AA/810:821,
1/AA/879:880
No text annotation
J4_9B50_0041/BA/268:269,
1/BA/370:375,
1/BA/399:406,
1/BA/421:424
No text annotation
J4_9B50_0051/BA/297:301,
1/BA/316:319,
1/BA/323:325,
1/BA/337:341
No text annotation
J4_9B50_0061/BA/601:604,
1/BA/624:628,
1/BA/635:638,
1/BA/650:656
No text annotation
J4_9B50_0071/BA/1270:1276,
1/BA/1294:1295,
1/BA/1645:1648,
1/BA/2009:2010
No text annotation
J4_9B50_0081/BA/1310:1314,
1/BA/1338:1343,
1/BA/1404:1405,
1/BA/1597:1604
No text annotation
J4_9B50_0091/BA/1313:1314,
1/BA/1338:1343,
1/BA/1404:1405,
1/BA/1597:1603
No text annotation
J4_9B50_0101/BA/1444:1445,
1/BA/1466:1467,
1/BA/1525:1526,
1/BA/1546:1547
No text annotation
J4_9B50_0111/BA/1772:1776,
1/BA/1788:1792,
1/BA/1827:1830,
1/BA/1975:1979
No text annotation
J4_9B50_0121/BA/1833:1835,
1/BA/1905:1906,
1/BA/1924:1933,
1/BA/1967:1972
No text annotation
J4_9B50_0131/BA/2285:2289,
1/BA/2343:2347,
1/BA/2370:2372,
1/BA/2381:2383
No text annotation
J4_9B50_0141/BA/2643:2646,
1/BA/2674:2676,
1/BA/2731:2735,
1/BA/2769:2771
No text annotation
J5_9B50_0011/AA/36:39,
1/AA/403:406,
1/AA/436:440,
1/AA/497:503,
1/AA/542:548
No text annotation
J5_9B50_0021/AA/36:39,
1/AA/403:406,
1/AA/436:442,
1/AA/492:503,
1/AA/542:548
No text annotation
J5_9B50_0031/AA/58:61,
1/AA/106:113,
1/AA/314:316,
1/AA/337:339,
1/AA/350:354
No text annotation
J5_9B50_0041/BA/47:54,
1/BA/116:121,
1/BA/130:131,
1/BA/148:150,
1/BA/176:178
No text annotation
J5_9B50_0051/BA/531:533,
1/BA/560:564,
1/BA/577:579,
1/BA/1261:1262,
1/BA/2017:2018
No text annotation
J5_9B50_0061/BA/584:589,
1/BA/668:671,
1/BA/809:812,
1/BA/1195:1196,
1/BA/1250:1256
No text annotation
J5_9B50_0071/BA/1674:1682,
1/BA/1706:1707,
1/BA/1751:1752,
1/BA/1756:1764,
1/BA/1988:1990
No text annotation
J5_9B50_0081/BA/2057:2064,
1/BA/2446:2453,
1/BA/2500:2507,
1/BA/2582:2588,
1/BA/2606:2611
No text annotation
J5_9B50_0091/BA/2074:2077,
1/BA/2243:2246,
1/BA/2258:2259,
1/BA/2281:2282,
1/BA/2427:2435
No text annotation
J6_9B50_0011/BA/45:46,
1/BA/179:183,
1/BA/214:224,
1/BA/231:235,
1/BA/262:266,
1/BA/426:433
No text annotation
J6_9B50_0021/BA/2074:2077,
1/BA/2243:2246,
1/BA/2258:2259,
1/BA/2281:2284,
1/BA/2384:2395,
1/BA/2421:2435
No text annotation
J7_9B50_0011/BA/8:15,
1/BA/525:531,
1/BA/2018:2023,
1/BA/2040:2043,
1/BA/2625:2630,
1/BA/2788:2789,
1/BA/2894:2895
No text annotation
J7_9B50_0021/BA/817:822,
1/BA/835:838,
1/BA/940:946,
1/BA/971:976,
1/BA/987:991,
1/BA/1163:1164,
1/BA/1185:1190
No text annotation

Problematic loops

#loop idProblemSequence
J3_9B50_025No text annotation
J3_9B50_026No text annotation

Coloring options:
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