HL_9B50_008

3D structure

PDB id

9B50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (unmethylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B50_008 not in the Motif Atlas

Geometric match to HL_8B0X_007

Geometric discrepancy: 0.0546

The information below is about HL_8B0X_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39665.1

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9B50|1|AA|A|320
9B50|1|AA|A|321
9B50|1|AA|C|322
9B50|1|AA|U|323
9B50|1|AA|G|324
9B50|1|AA|A|325
9B50|1|AA|G|326
9B50|1|AA|A|327
9B50|1|AA|C|328
9B50|1|AA|A|329
9B50|1|AA|C|330
9B50|1|AA|G|331
9B50|1|AA|G|332
9B50|1|AA|U|333

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AP

30S ribosomal protein S16

Chain AT

30S ribosomal protein S20