HL_9B50_011

3D structure

PDB id

9B50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (unmethylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

9B50|1|AA|U|421

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B50_011 not in the Motif Atlas

Geometric match to HL_4WF9_040

Geometric discrepancy: 0.2107

The information below is about HL_4WF9_040

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

60

Unit IDs

9B50|1|AA|C|419
9B50|1|AA|U|420
9B50|1|AA|U|421
9B50|1|AA|C|422
9B50|1|AA|G|423
9B50|1|AA|G|424

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AC

30S ribosomal protein S3

Chain AD

30S ribosomal protein S4