HL_9B50_020

3D structure

PDB id

9B50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (unmethylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B50_020 not in the Motif Atlas

Geometric match to HL_8P9A_214

Geometric discrepancy: 0.0612

The information below is about HL_8P9A_214

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

9B50|1|AA|C|897
9B50|1|AA|G|898
9B50|1|AA|C|899
9B50|1|AA|A|900
9B50|1|AA|A|901
9B50|1|AA|G|902

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain BA

Large subunit ribosomal RNA; LSU rRNA