HL_9B50_043

3D structure

PDB id

9B50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (unmethylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

9B50|1|BA|G|329, 9B50|1|BA|A|330, 9B50|1|BA|C|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B50_043 not in the Motif Atlas

Geometric match to HL_8B0X_043

Geometric discrepancy: 0.0856

The information below is about HL_8B0X_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27670.3

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

15

Unit IDs

9B50|1|BA|G|327
9B50|1|BA|U|328
9B50|1|BA|G|329
9B50|1|BA|A|330
9B50|1|BA|C|331
9B50|1|BA|A|332
9B50|1|BA|G|333
9B50|1|BA|C|334
9B50|1|BA|C|335

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BE

50S ribosomal protein L4

Chain BU

50S ribosomal protein L24