HL_9B50_049

3D structure

PDB id

9B50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (unmethylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UUUUGUAUAA

Length

10 nucleotides

Bulged bases

9B50|1|BA|A|574

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B50_049 not in the Motif Atlas

Geometric match to HL_8B0X_048

Geometric discrepancy: 0.0487

The information below is about HL_8B0X_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33597.2

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

9B50|1|BA|U|566
9B50|1|BA|U|567
9B50|1|BA|U|568
9B50|1|BA|U|569
9B50|1|BA|G|570
9B50|1|BA|U|571
9B50|1|BA|A|572
9B50|1|BA|U|573
9B50|1|BA|A|574
9B50|1|BA|A|575

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B0

50S ribosomal protein L32

Chain BD

50S ribosomal protein L3

Chain BL

50S ribosomal protein L15

Chain BQ

50S ribosomal protein L20

Chain BR

50S ribosomal protein L21