HL_9B50_063

3D structure

PDB id

9B50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (unmethylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUGAAAAGC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B50_063 not in the Motif Atlas

Geometric match to HL_8B0X_060

Geometric discrepancy: 0.045

The information below is about HL_8B0X_060

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33597.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

96

Unit IDs

9B50|1|BA|G|1281
9B50|1|BA|U|1282
9B50|1|BA|G|1283
9B50|1|BA|A|1284
9B50|1|BA|A|1285
9B50|1|BA|A|1286
9B50|1|BA|A|1287
9B50|1|BA|G|1288
9B50|1|BA|C|1289

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B0

50S ribosomal protein L32

Chain BN

50S ribosomal protein L17

Chain BS

50S ribosomal protein L22