HL_9B50_066

3D structure

PDB id

9B50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (unmethylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

9B50|1|BA|U|1396, 9B50|1|BA|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B50_066 not in the Motif Atlas

Geometric match to HL_8B0X_063

Geometric discrepancy: 0.0661

The information below is about HL_8B0X_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77449.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

14

Unit IDs

9B50|1|BA|G|1389
9B50|1|BA|U|1390
9B50|1|BA|U|1391
9B50|1|BA|A|1392
9B50|1|BA|A|1393
9B50|1|BA|U|1394
9B50|1|BA|A|1395
9B50|1|BA|U|1396
9B50|1|BA|U|1397
9B50|1|BA|C|1398

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BT

50S ribosomal protein L23