HL_9B50_071

3D structure

PDB id

9B50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (unmethylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

9B50|1|BA|A|1614, 9B50|1|BA|A|1616, 9B50|1|BA|A|1618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B50_071 not in the Motif Atlas

Geometric match to HL_8B0X_068

Geometric discrepancy: 0.0498

The information below is about HL_8B0X_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28592.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

11

Unit IDs

9B50|1|BA|C|1612
9B50|1|BA|G|1613
9B50|1|BA|A|1614
9B50|1|BA|C|1615
9B50|1|BA|A|1616
9B50|1|BA|C|1617
9B50|1|BA|A|1618
9B50|1|BA|G|1619

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B2

50S ribosomal protein L34

Chain BS

50S ribosomal protein L22