HL_9B50_081

3D structure

PDB id

9B50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (unmethylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

9B50|1|BA|A|2030, 9B50|1|BA|A|2031, 9B50|1|BA|G|2032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B50_081 not in the Motif Atlas

Geometric match to HL_8B0X_078

Geometric discrepancy: 0.0651

The information below is about HL_8B0X_078

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

10

Unit IDs

9B50|1|BA|G|2027
9B50|1|BA|U|2028
9B50|1|BA|G|2029
9B50|1|BA|A|2030
9B50|1|BA|A|2031
9B50|1|BA|G|2032
9B50|1|BA|A|2033
9B50|1|BA|U|2034
9B50|1|BA|G|2035
9B50|1|BA|C|2036

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B0

50S ribosomal protein L32

Chain BD

50S ribosomal protein L3

Chain BR

50S ribosomal protein L21