3D structure

PDB id
9B50 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome complex (unmethylated 16S A1408 + arbekacin)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
CUGGGGCGG
Length
9 nucleotides
Bulged bases
9B50|1|BA|G|2250
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9B50_084 not in the Motif Atlas
Geometric match to HL_8B0X_080
Geometric discrepancy: 0.0676
The information below is about HL_8B0X_080
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_11974.1
Basepair signature
cWW-F-F-F-F-F-F
Number of instances in this motif group
16

Unit IDs

9B50|1|BA|C|2248
9B50|1|BA|U|2249
9B50|1|BA|G|2250
9B50|1|BA|G|2251
9B50|1|BA|G|2252
9B50|1|BA|G|2253
9B50|1|BA|C|2254
9B50|1|BA|G|2255
9B50|1|BA|G|2256

Current chains

Chain BA
23S ribosomal RNA

Nearby chains

Chain BM
50S ribosomal protein L16
Chain BW
50S ribosomal protein L27

Coloring options:


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