HL_9B50_088

3D structure

PDB id

9B50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (unmethylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGACGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B50_088 not in the Motif Atlas

Geometric match to HL_8B0X_084

Geometric discrepancy: 0.0343

The information below is about HL_8B0X_084

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

9B50|1|BA|U|2356
9B50|1|BA|G|2357
9B50|1|BA|A|2358
9B50|1|BA|C|2359
9B50|1|BA|G|2360
9B50|1|BA|G|2361

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B3

50S ribosomal protein L35

Chain BL

50S ribosomal protein L15

Chain BW

50S ribosomal protein L27