HL_9B50_092

3D structure

PDB id

9B50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (unmethylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGAAGUAG

Length

8 nucleotides

Bulged bases

9B50|1|BA|G|2529

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B50_092 not in the Motif Atlas

Geometric match to HL_8B0X_088

Geometric discrepancy: 0.0789

The information below is about HL_8B0X_088

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_46665.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

9B50|1|BA|U|2528
9B50|1|BA|G|2529
9B50|1|BA|A|2530
9B50|1|BA|A|2531
9B50|1|BA|G|2532
9B50|1|BA|U|2533
9B50|1|BA|A|2534
9B50|1|BA|G|2535

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B4

50S ribosomal protein L36

Chain BG

50S ribosomal protein L6