HL_9B51_045

3D structure

PDB id

9B51 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (N1-methylated 16S A1408 + G418)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UGAAUCCAUAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B51_045 not in the Motif Atlas

Geometric match to HL_8B0X_037

Geometric discrepancy: 0.0672

The information below is about HL_8B0X_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50765.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

9B51|1|BA|U|158
9B51|1|BA|G|159
9B51|1|BA|A|160
9B51|1|BA|A|161
9B51|1|BA|U|162
9B51|1|BA|C|163
9B51|1|BA|C|164
9B51|1|BA|A|165
9B51|1|BA|U|166
9B51|1|BA|A|167
9B51|1|BA|G|168

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BX

50S ribosomal protein L28