HL_9B51_088

3D structure

PDB id

9B51 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (N1-methylated 16S A1408 + G418)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

9B51|1|BA|U|1955

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B51_088 not in the Motif Atlas

Geometric match to HL_8B0X_077

Geometric discrepancy: 0.0484

The information below is about HL_8B0X_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61418.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

9B51|1|BA|G|1949
9B51|1|BA|G|1950
9B51|1|BA|U|1951
9B51|1|BA|A|1952
9B51|1|BA|A|1953
9B51|1|BA|G|1954
9B51|1|BA|U|1955
9B51|1|BA|U|1956
9B51|1|BA|C|1957

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BK

50S ribosomal protein L14