HL_9B51_098

3D structure

PDB id

9B51 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (N1-methylated 16S A1408 + G418)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UGAAUGGAAG

Length

10 nucleotides

Bulged bases

9B51|1|BA|A|2406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B51_098 not in the Motif Atlas

Geometric match to HL_8B0X_086

Geometric discrepancy: 0.0577

The information below is about HL_8B0X_086

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51853.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

9B51|1|BA|U|2404
9B51|1|BA|G|2405
9B51|1|BA|A|2406
9B51|1|BA|A|2407
9B51|1|BA|U|2408
9B51|1|BA|G|2409
9B51|1|BA|G|2410
9B51|1|BA|A|2411
9B51|1|BA|A|2412
9B51|1|BA|G|2413

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BL

50S ribosomal protein L15