HL_9B51_103

3D structure

PDB id

9B51 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (N1-methylated 16S A1408 + G418)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B51_103 not in the Motif Atlas

Geometric match to HL_9E6Q_062

Geometric discrepancy: 0.0903

The information below is about HL_9E6Q_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.3

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

9B51|1|BA|C|2658
9B51|1|BA|G|2659
9B51|1|BA|A|2660
9B51|1|BA|G|2661
9B51|1|BA|A|2662
9B51|1|BA|G|2663

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BG

50S ribosomal protein L6