HL_9E6Q_062

3D structure

PDB id

9E6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9E6Q_062 not in the Motif Atlas

Homologous match to HL_4V9F_066

Geometric discrepancy: 0.08

The information below is about HL_4V9F_066

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

9E6Q|1|1|C|2773
9E6Q|1|1|G|2774
9E6Q|1|1|A|2775
9E6Q|1|1|G|2776
9E6Q|1|1|A|2777
9E6Q|1|1|G|2778

Current chains

Chain 1

23S rRNA

Nearby chains

Chain AE

Large ribosomal subunit protein uL6

Chain Ag

Large ribosomal subunit protein eL40