HL_9BDL_009

3D structure

PDB id

9BDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CCUGAGAAACGG

Length

12 nucleotides

Bulged bases

9BDL|1|A18S|C|450, 9BDL|1|A18S|G|451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BDL_009 not in the Motif Atlas

Homologous match to HL_4V88_195

Geometric discrepancy: 0.0713

The information below is about HL_4V88_195

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06226.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

9BDL|1|A18S|C|441
9BDL|1|A18S|C|442
9BDL|1|A18S|U|443
9BDL|1|A18S|G|444
9BDL|1|A18S|A|445
9BDL|1|A18S|G|446
9BDL|1|A18S|A|447
9BDL|1|A18S|A|448
9BDL|1|A18S|A|449
9BDL|1|A18S|C|450
9BDL|1|A18S|G|451
9BDL|1|A18S|G|452

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS04

40S ribosomal protein S4

Chain AS06

40S ribosomal protein S6

Chain AS08

40S ribosomal protein S8

Chain AS24

40S ribosomal protein S24