HL_9BDL_012

3D structure

PDB id

9BDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUUUCG

Length

6 nucleotides

Bulged bases

9BDL|1|A18S|U|541

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BDL_012 not in the Motif Atlas

Geometric match to HL_5J7L_179

Geometric discrepancy: 0.3561

The information below is about HL_5J7L_179

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_04783.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

9

Unit IDs

9BDL|1|A18S|C|539
9BDL|1|A18S|U|540
9BDL|1|A18S|U|541
9BDL|1|A18S|U|542
9BDL|1|A18S|C|543
9BDL|1|A18S|G|544

Current chains

Chain A18S

18S rRNA

Nearby chains