HL_9BDL_021
3D structure
- PDB id
- 9BDL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with angiogenin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GAUCAGAUACC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9BDL_021 not in the Motif Atlas
- Homologous match to HL_4V88_208
- Geometric discrepancy: 0.1744
- The information below is about HL_4V88_208
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
9BDL|1|A18S|G|1054
9BDL|1|A18S|A|1055
9BDL|1|A18S|U|1056
9BDL|1|A18S|C|1057
9BDL|1|A18S|A|1058
9BDL|1|A18S|G|1059
9BDL|1|A18S|A|1060
9BDL|1|A18S|U|1061
9BDL|1|A18S|A|1062
9BDL|1|A18S|C|1063
9BDL|1|A18S|C|1064
Current chains
- Chain A18S
- 18S rRNA
Nearby chains
- Chain A28S
- Large subunit ribosomal RNA; LSU rRNA
- Chain AS14
- Small ribosomal subunit protein uS11
- Chain ETRN
- Transfer RNA; tRNA
- Chain MRNA
- Model mRNA
- Chain PTRN
- Transfer RNA; tRNA
Coloring options: