HL_9BDL_042
3D structure
- PDB id
- 9BDL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with angiogenin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CUUGGGAAUG
- Length
- 10 nucleotides
- Bulged bases
- 9BDL|1|A28S|G|294, 9BDL|1|A28S|A|295
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9BDL_042 not in the Motif Atlas
- Homologous match to HL_8C3A_008
- Geometric discrepancy: 0.2108
- The information below is about HL_8C3A_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_77436.2
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 23
Unit IDs
9BDL|1|A28S|C|289
9BDL|1|A28S|U|290
9BDL|1|A28S|U|291
9BDL|1|A28S|G|292
9BDL|1|A28S|G|293
9BDL|1|A28S|G|294
9BDL|1|A28S|A|295
9BDL|1|A28S|A|296
9BDL|1|A28S|U|297
9BDL|1|A28S|G|298
Current chains
- Chain A28S
- 28S rRNA
Nearby chains
- Chain AL13
- Large ribosomal subunit protein eL13
- Chain AL15
- 60S ribosomal protein L15
- Chain AL18
- Large ribosomal subunit protein eL18
- Chain AL28
- 60S ribosomal protein L27a
- Chain AL42
- eL42
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