HL_9BDL_048

3D structure

PDB id

9BDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGAGACCCG

Length

9 nucleotides

Bulged bases

9BDL|1|A28S|A|966, 9BDL|1|A28S|C|967

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BDL_048 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.2367

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

9BDL|1|A28S|C|962
9BDL|1|A28S|G|963
9BDL|1|A28S|A|964
9BDL|1|A28S|G|965
9BDL|1|A28S|A|966
9BDL|1|A28S|C|967
9BDL|1|A28S|C|968
9BDL|1|A28S|C|969
9BDL|1|A28S|G|970

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL04

60S ribosomal protein L4

Chain AL06

60S ribosomal protein L6

Chain AL07

60S ribosomal protein L7