HL_9BDL_054
3D structure
- PDB id
- 9BDL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with angiogenin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CCUUCCAGUCCG
- Length
- 12 nucleotides
- Bulged bases
- 9BDL|1|A28S|C|1437, 9BDL|1|A28S|U|1438
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9BDL_054 not in the Motif Atlas
- Geometric match to HL_2Y8W_001
- Geometric discrepancy: 0.3009
- The information below is about HL_2Y8W_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_40612.1
- Basepair signature
- cWW
- Number of instances in this motif group
- 3
Unit IDs
9BDL|1|A28S|C|1436
9BDL|1|A28S|C|1437
9BDL|1|A28S|U|1438
9BDL|1|A28S|U|1440
9BDL|1|A28S|C|1441
9BDL|1|A28S|C|1442
9BDL|1|A28S|A|1443
9BDL|1|A28S|G|1444
9BDL|1|A28S|U|1445
9BDL|1|A28S|C|1446
9BDL|1|A28S|C|1447
9BDL|1|A28S|G|1448
Current chains
- Chain A28S
- 28S rRNA
Nearby chains
- Chain AL04
- 60S ribosomal protein L4
- Chain AL07
- 60S ribosomal protein L7
- Chain AL18
- Large ribosomal subunit protein eL18
- Chain AL29
- Large ribosomal subunit protein eL29
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