HL_9BDL_065

3D structure

PDB id

9BDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GAGUGUGUAACAACUC

Length

16 nucleotides

Bulged bases

9BDL|1|A28S|A|2002

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BDL_065 not in the Motif Atlas

Geometric match to HL_5TBW_227

Geometric discrepancy: 0.3961

The information below is about HL_5TBW_227

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02373.2

Basepair signature

cWW-cWW-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

9BDL|1|A28S|G|2001
9BDL|1|A28S|A|2002
9BDL|1|A28S|G|2003
9BDL|1|A28S|U|2004
9BDL|1|A28S|G|2005
9BDL|1|A28S|U|2006
9BDL|1|A28S|G|2007
9BDL|1|A28S|U|2008
9BDL|1|A28S|A|2009
9BDL|1|A28S|A|2010
9BDL|1|A28S|C|2011
9BDL|1|A28S|A|2012
9BDL|1|A28S|A|2013
9BDL|1|A28S|C|2014
9BDL|1|A28S|U|2015
9BDL|1|A28S|C|2016

Current chains

Chain A28S

28S rRNA

Nearby chains