HL_9BDL_080

3D structure

PDB id

9BDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UGAACAG

Length

7 nucleotides

Bulged bases

9BDL|1|A28S|C|2814

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BDL_080 not in the Motif Atlas

Homologous match to HL_5TBW_042

Geometric discrepancy: 0.0662

The information below is about HL_5TBW_042

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

9BDL|1|A28S|U|2810
9BDL|1|A28S|G|2811
9BDL|1|A28S|A|2812
9BDL|1|A28S|A|2813
9BDL|1|A28S|C|2814
9BDL|1|A28S|A|2815
9BDL|1|A28S|G|2816

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL19

60S ribosomal protein L19