HL_9BDL_093

3D structure

PDB id

9BDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UCAAACGGUAACG

Length

13 nucleotides

Bulged bases

9BDL|1|A28S|A|4214, 9BDL|1|A28S|C|4221

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BDL_093 not in the Motif Atlas

Homologous match to HL_5TBW_055

Geometric discrepancy: 0.1256

The information below is about HL_5TBW_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.9

Basepair signature

cWW-tHH-cWW-tHS-F-F-tWW

Number of instances in this motif group

8

Unit IDs

9BDL|1|A28S|U|4210
9BDL|1|A28S|C|4211
9BDL|1|A28S|A|4212
9BDL|1|A28S|A|4213
9BDL|1|A28S|A|4214
9BDL|1|A28S|C|4215
9BDL|1|A28S|G|4216
9BDL|1|A28S|G|4217
9BDL|1|A28S|U|4218
9BDL|1|A28S|A|4219
9BDL|1|A28S|A|4220
9BDL|1|A28S|C|4221
9BDL|1|A28S|G|4222

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL10

Ribosomal protein L10

Chain AL21

60S ribosomal protein L21

Chain AL29

Large ribosomal subunit protein eL29