HL_9BDL_096

3D structure

PDB id

9BDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UUCAGUACG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BDL_096 not in the Motif Atlas

Homologous match to HL_8C3A_059

Geometric discrepancy: 0.2

The information below is about HL_8C3A_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34636.1

Basepair signature

cWW-cWW-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

9BDL|1|A28S|U|4301
9BDL|1|A28S|U|4302
9BDL|1|A28S|C|4303
9BDL|1|A28S|A|4304
9BDL|1|A28S|G|4305
9BDL|1|A28S|U|4306
9BDL|1|A28S|A|4307
9BDL|1|A28S|C|4308
9BDL|1|A28S|G|4309

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL18

Large ribosomal subunit protein eL18

Chain AL21

60S ribosomal protein L21

Chain AL28

60S ribosomal protein L27a

Chain AL42

eL42